View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_high_37 (Length: 271)
Name: NF1270_high_37
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 247115 - 246884
Alignment:
| Q |
30 |
ccaaggactggaatttacttccctgttggccatgaatgggtaatggaagatgttcctgatggcgctgccaccttctccgagacctgttacttcagaaact |
129 |
Q |
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| T |
247115 |
ccaaggactggaatttacttccctgttggccatgaatgggtaatggaagatgttcctgatggtgctgccaccttctccgagacctgttacttcagaaact |
247016 |
T |
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| Q |
130 |
aatcatgttttctaattcatgttattgctagctattgtggtcggagtggatagcattcaaaatgaactaatgtaatatcatacgtatacctccatcacca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
247015 |
aatcatgttttctaattcatgttattgctagctattgtggtcggagtggatggcattcaaaatgaactaatgtaatatcatacgtatacctccatcacca |
246916 |
T |
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| Q |
230 |
ccagaaaataa--acactatgtttactatatt |
259 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
246915 |
ccagaaaataaatacactatgtttactatatt |
246884 |
T |
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