View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_1 (Length: 760)
Name: NF1270_low_1
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 29 - 526
Target Start/End: Complemental strand, 32738232 - 32737734
Alignment:
| Q |
29 |
gcagagacatcaagctagtgtgaatgccatagcgtgggcgccacatagttcttgtcatatttgcactgctggtgatgattctcaggcgttgatttgggat |
128 |
Q |
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| T |
32738232 |
gcagaggcatcaagctagtgtgaatgccatagcgtgggcgccacatagttcttgtcatatttgcactgctggtgatgattctcaggcgttgatttgggat |
32738133 |
T |
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| Q |
129 |
ctttcttcaatggggcagcctgttgaaggtgggcttgatcctattttggcttatactgctggtgctgagattgaacagcttcaatggtcttcttctcagc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32738132 |
ctttcttcaatggggcagcctgttgaaggtgggcttgatcctattttggcttatactgctggtgctgagattgaacagcttcaatggtcttcttctcagc |
32738033 |
T |
|
| Q |
229 |
ctgattgggtcgctattgctttttcgactaagcttcagattcttagggtttgaaaaattgaaaatttgcttggttcagtcttcctcaagaggcaagttga |
328 |
Q |
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| T |
32738032 |
ctgattgggtcgctattgctttttcgactaagcttcagattcttagggtttgaaaaattgaaaatttgcttggttgagtcttcctcaagaggcaagttga |
32737933 |
T |
|
| Q |
329 |
gtcttatgaaaaactgaaaattttattagtatttg-nnnnnnnngttgttgttgttaaagatttaacctttcattgggtttaggattaagatactttggg |
427 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32737932 |
gtcttatgaaaaactgaaaattttactagtatttgttttttttttttgttgttgttaaagatttaacctttcattgggtttaggattaagatactttggg |
32737833 |
T |
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| Q |
428 |
tttggtggaagaaatattggatggttaagatactagtatgtattgttacattcttgttagctggaaaatcccatttatgtaaatgtatttagacttcag |
526 |
Q |
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| T |
32737832 |
tttggtggaagaaatattggatggttaagatactattatgtattgttacattcttgttagctggaaaatcccatttatgtaaatgtatttagacttcag |
32737734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 592 - 740
Target Start/End: Complemental strand, 32737668 - 32737520
Alignment:
| Q |
592 |
tgtgcttaggctgtgtttggtattgctttgtctggataatgagtaatgagtgcannnnnnnnnnnnnnnnnnnngtatgactatgattatggcccgatat |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32737668 |
tgtgcttaggctgtgtttggtattgctttgtctggataatgagtaatgagtgcatttttcttttgtttttgtttgtatgactatgattatggcccgatat |
32737569 |
T |
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| Q |
692 |
ctttttcgtttctcacccgaaaccttcagcatagctgtgtgtggctgga |
740 |
Q |
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| T |
32737568 |
ctttttcgtttctcacccgaaaccttcagcatagctgtgtgtggctgga |
32737520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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