View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_11 (Length: 522)
Name: NF1270_low_11
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 181 - 383
Target Start/End: Complemental strand, 28596786 - 28596585
Alignment:
| Q |
181 |
ttagagatataaagttggctgctggttgagaactgagatagaagagttaacatagtttgctaagtgtagtctcgnnnnnnnnnnnnnnnaacaagtgtag |
280 |
Q |
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| T |
28596786 |
ttagagatataaagttggctgctggttgagaactgagatagaagagttaacatagtgtgctaagtgtagtctcgtttttttttttttt-aagaagtgtag |
28596688 |
T |
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| Q |
281 |
tctcaaattcgattatcacatctcacaaatacaaacaaaattaaaaagtttaaaatgtactaattagttttggaattcatcttatgtacggggtataagt |
380 |
Q |
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| T |
28596687 |
tctcaaattcgattatcacatctcacagatacaaacaaaattaaaaagtttaaaatgtactaattagttttggaattcatcttatgtacggggtataagt |
28596588 |
T |
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| Q |
381 |
tgc |
383 |
Q |
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||| |
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| T |
28596587 |
tgc |
28596585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 28596935 - 28596850
Alignment:
| Q |
35 |
attctattttgcatattagtcgttatgcttactaaacgcccac--nnnnnnngataaaagtactttatctttttatttgaaagaag |
118 |
Q |
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| T |
28596935 |
attctattttgcatattagtcgttatgcttactaaacgcccactttttttttgataaaagtactttatctttttatttgaaagaag |
28596850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 431 - 494
Target Start/End: Complemental strand, 28596537 - 28596474
Alignment:
| Q |
431 |
cacattctttgatatgttgaatgattttttagttaatgacacatcaaccataaatgacaatatt |
494 |
Q |
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| T |
28596537 |
cacattctttgatatattgaatgattttttaattaatgacacatcaatcataaatgacaatatt |
28596474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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