View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_12 (Length: 514)
Name: NF1270_low_12
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 34 - 485
Target Start/End: Complemental strand, 44869481 - 44869030
Alignment:
| Q |
34 |
tgaaaaacaataaaaccactgggactaaaataatttttaaatgaaattgattttatacattcatacatggttttaaattgcagtttgcagacataaaggg |
133 |
Q |
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| T |
44869481 |
tgaaaaacaataaaaccattgggactaaaataatttttaaatgaaattgattttatatgttcatacatggttttaaattgcagtttgcagacataaaggg |
44869382 |
T |
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| Q |
134 |
ttttgagatctcaggaaaggcatattacggccacaattttgacggcacgccacattttcctatattttactgcaattaaaagtttctcaacctaaccaca |
233 |
Q |
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| T |
44869381 |
ttttgagatctcaggaaaggcatatcacggccacaattttgacggcacgccacattttcctatattttaccgcaattaaaagtttctcaacctaaccaca |
44869282 |
T |
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| Q |
234 |
accgcaatttaaaatcatgtatcatctaaattactttttcctccataatggattttagcttgaagttgagattgaattcaaattaatatttttgaaatca |
333 |
Q |
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| T |
44869281 |
accgcaatttaaaatcatgtatcatctaaattactttttcctccataatgaattttagcttgaagttgagattgaattcaaattaatatttttgaaatca |
44869182 |
T |
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| Q |
334 |
atttgaaattaaagacagaggaagccattgaaatttgaaaaacaataataacaaaaaacatcatactctgtgcaaaggattgattgtcagctgtgaagat |
433 |
Q |
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| T |
44869181 |
atttgaaattaaagacagaggaagccattgaaatttgaaaaacaataataacaaaaaacatcatactctgtgcaaaggattgattgtcagctgtgaagat |
44869082 |
T |
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| Q |
434 |
tatgttaaaaggacatgcgccatttttcttgcacaacccggcaggaagttgc |
485 |
Q |
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| T |
44869081 |
tatgttaaaaggacatgcgccatttttcttgcacaacccggcaggaagttgc |
44869030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 44858547 - 44858458
Alignment:
| Q |
396 |
atactctgtgcaaaggattgattgtcagctgtgaagattatgttaaaaggacatgcgccatttttcttgcacaacccggcaggaagttgc |
485 |
Q |
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| T |
44858547 |
atactctgtgcaaaggagtgattgtcggcggtgaaaagcatgttaaaacgacaggaagcattttccttgcacaacacagtaggaagttgc |
44858458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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