View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_13 (Length: 497)
Name: NF1270_low_13
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 469
Target Start/End: Original strand, 9219257 - 9219716
Alignment:
| Q |
9 |
gagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatca |
108 |
Q |
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| T |
9219257 |
gagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatca |
9219356 |
T |
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| Q |
109 |
atagctaacatgcatgctgaatactttaatcatannnnnnncctggtcttaacccttcggcccttttagtaatcttgagttcgacttaaacttaggtaaa |
208 |
Q |
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| T |
9219357 |
atagctaacatgcatgctgaataccttaatcatatttttttcctggtcttaacccttcgacccttttagtagtctggagttcaacttaaagttagataaa |
9219456 |
T |
|
| Q |
209 |
tgtaactaaatattgttctagagtcggttatcaaactcgagtatttgcaactgattcaatcctaactaaaacttgtgacaatatatgtgggctatgctta |
308 |
Q |
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| T |
9219457 |
tgtaactaaaaattgttctagagtcagttatcaaactcgagtattcgca-ctgattcaatcttaactagaaattgtgaaaatatatgtgggttattctta |
9219555 |
T |
|
| Q |
309 |
gtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgta |
408 |
Q |
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| T |
9219556 |
gtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagattgtccattaggacaaaaacattcgta |
9219655 |
T |
|
| Q |
409 |
tgatccatctgtgttgcgacaatgactttcatctatacatgtgttattcaatgtcttacat |
469 |
Q |
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| T |
9219656 |
aaacccatccgtgttgcgacaatgactttcacttatgcatgtgttattcaatgtcttacat |
9219716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 296 - 456
Target Start/End: Original strand, 9162578 - 9162738
Alignment:
| Q |
296 |
tgggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggac |
395 |
Q |
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||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
9162578 |
tgggctatgtttagtgacataccaatggcaaccttgataacaatatctcgtctatgacaacctccttcaagtgttccatttccagattgtccatcaggac |
9162677 |
T |
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| Q |
396 |
aaaaacattcgtatgatccatctgtgttgcgacaatgactttcatctatacatgtgttatt |
456 |
Q |
| |
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| T |
9162678 |
agaaacattcatataatccatccgtgttgcgacagtgactttcatctatacatgtgttatt |
9162738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 313 - 469
Target Start/End: Original strand, 9156784 - 9156940
Alignment:
| Q |
313 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
412 |
Q |
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| T |
9156784 |
cttaccaatggcaaccttggtgatgacctctcgtctatgacaccctccttccaatgttccatttccagagtgtccatcaggacagaaacattcatgagat |
9156883 |
T |
|
| Q |
413 |
ccatctgtgttgcgacaatgactttcatctatacatgtgttattcaatgtcttacat |
469 |
Q |
| |
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| T |
9156884 |
ccatcagtattgcgacaatgatcttcatttatgcatgtgttatttgaagtcttacat |
9156940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 457
Target Start/End: Original strand, 9201067 - 9201226
Alignment:
| Q |
298 |
ggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaa |
397 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||| || |||| || |||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
9201067 |
ggctatgcttaggttcttaccaattgcaaccttggtaataacatcttgtttatgacaacctcctgccaacgttccatttccagattgtccatcaggacaa |
9201166 |
T |
|
| Q |
398 |
aaacattcgtatgatccatctgtgttgcgacaatgactttcatctatacatgtgttattc |
457 |
Q |
| |
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|||||||| | |||||||| || ||||||||||| ||||| ||| |||||||||||| |
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| T |
9201167 |
aaacattcatgagatccatcagtattgcgacaatgtttttcacttatgcatgtgttattc |
9201226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 313 - 454
Target Start/End: Original strand, 9171392 - 9171533
Alignment:
| Q |
313 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
412 |
Q |
| |
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| T |
9171392 |
cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattcatagaac |
9171491 |
T |
|
| Q |
413 |
ccatctgtgttgcgacaatgactttcatctatacatgtgtta |
454 |
Q |
| |
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| T |
9171492 |
ccatccttgttgcgacaatgatcttcatttatgcatgtgtta |
9171533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 313 - 454
Target Start/End: Original strand, 9179374 - 9179515
Alignment:
| Q |
313 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
412 |
Q |
| |
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| T |
9179374 |
cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattcatagaac |
9179473 |
T |
|
| Q |
413 |
ccatctgtgttgcgacaatgactttcatctatacatgtgtta |
454 |
Q |
| |
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||||| |||||||||||||| ||||| ||| ||||||||| |
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| T |
9179474 |
ccatccttgttgcgacaatgatcttcatttatgcatgtgtta |
9179515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 469
Target Start/End: Complemental strand, 9117819 - 9117646
Alignment:
| Q |
296 |
tgggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggac |
395 |
Q |
| |
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|||| ||| ||||| | |||||||||| |||||||| |||| | |||| || ||||||| ||||||||| ||||||||| || || || || | |||| |
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| T |
9117819 |
tgggatattcttagaggcttaccaatgacaaccttgataactacatcttgtgtatgacaccctccttcccttgttccattgccggattgccccttcggac |
9117720 |
T |
|
| Q |
396 |
aaaaacattcgtatgatccatctgtgttgcgacaatgactttcatctatacatgtgttattcaatgtcttacat |
469 |
Q |
| |
|
|||| |||| ||| |||||||| ||||| |||| ||| || || ||| |||||||||||| |||||||||| |
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|
| T |
9117719 |
aaaagcatttgtaagatccatcaatgttgtgacagtgatctttatatatgcatgtgttattccctgtcttacat |
9117646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 9162352 - 9162459
Alignment:
| Q |
13 |
tgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatcaatag |
112 |
Q |
| |
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| T |
9162352 |
tgaaatcgccacaaatagaataatgattccagcacttgctcctgcatttgaaatgtattgaagtcaattcataaattgttctataaaataatatcgatag |
9162451 |
T |
|
| Q |
113 |
ctaacatg |
120 |
Q |
| |
|
|||||||| |
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|
| T |
9162452 |
ctaacatg |
9162459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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