View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_low_16 (Length: 477)
Name: NF1270_low_16
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 2 - 448
Target Start/End: Complemental strand, 30636700 - 30636254
Alignment:
| Q |
2 |
ttttttaaatcaaaaaacactttttaaatgcgaaactttcatgtgaaagaaaagaatgtaacaagacccatattccactttactctttccacaaccgtga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30636700 |
ttttttaaatcaaaaaacactttttaaatgcgaaactttcatgtgaaagaaaagaatgtaacaagacccatattccactttactctttccacaaccgtga |
30636601 |
T |
|
| Q |
102 |
cttctataattaaagggcactaaaaatgtacgaaaaattaactattgtgaagcttggaaaggttgaatggtcgcaattctacttttgaaagttgtcattg |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30636600 |
cttctataattaaatggcactaaaaatgtacgaaaaattaactattgtgaagcttggaaaggttgaatggtcgcaattctacttttgaaagctgtcattg |
30636501 |
T |
|
| Q |
202 |
taattaaaattcataatcactaatcagattcagggcagttaagtcaaggctcacctcctcccatataagaccggtaagtaaaaattcaacttataatatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30636500 |
taattaaaattcataatcactaatcagattcagggcagttaagtcaaggctcacctcctcccatataagactagtaagtaaaaattcaacttataatatg |
30636401 |
T |
|
| Q |
302 |
ttttttctggacactgtcaatttaatattttattaccatagggacaaaccatagtatacgtaaaagagctgattctgctatagccttgggataaaagact |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30636400 |
ttttttctggacactgtcaatttaatattttattaccatagggacaaaccatagtatacgtaaaagagctgattctgctatagccttggtataaaagact |
30636301 |
T |
|
| Q |
402 |
gcataaagtctggattgaaagattttccactttagtgagacaatttc |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30636300 |
gcataaagtctggattgaaagattttccactttagtgagacaatttc |
30636254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University