View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_17 (Length: 476)
Name: NF1270_low_17
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Complemental strand, 19755684 - 19755256
Alignment:
| Q |
20 |
agataatggtaacaatgtaattgatggagaagcagctgtgaagggccccataaagaaaaatcgagggcgtaaagaaggcaaacctgctagtgcacattca |
119 |
Q |
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| T |
19755684 |
agataatggtaacaatgtaactgatggaaaagctgttgtgaagggccccataaagaaaaatcgagggcgtaaacaaggcaaacctagtagtacacattca |
19755585 |
T |
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| Q |
120 |
tgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcgacttttttatgt |
219 |
Q |
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| T |
19755584 |
tgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaaccttctttattaacttcgactttttaatgt |
19755485 |
T |
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| Q |
220 |
gtttaagggtgctaaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattgaccccatctttgaggacaatatg |
319 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19755484 |
gtttcagggtgctgaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattaaccccatctttgaggacaatatg |
19755385 |
T |
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| Q |
320 |
atagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaac |
419 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19755384 |
ataattgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctcaagatttgaatgataaaagtgttgaagatgatcaac |
19755285 |
T |
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| Q |
420 |
aacacatttatgaagaaaatgaagggggt |
448 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
19755284 |
aacacattgatgaagaaaatgaagggggt |
19755256 |
T |
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