View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_19 (Length: 467)
Name: NF1270_low_19
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_19 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 1451 - 1877
Alignment:
| Q |
11 |
ataatatgtgagaacgaatttgtgtgagagattggagaagcttaaggtgtgaatgtgacgcgtggttgacagacgaatgtgttttttggcgaaattggga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1451 |
ataagatgtgagaacgaatttgtgtgagagattggagaagcttaaggtgtgaatgtgacgcgtggtcgacagacgaatgtgttttttggcgaaattggga |
1550 |
T |
|
| Q |
111 |
ttagaaattagggatttctatgacttgcaaacgtatcgaagttgaaggaagagcttcacaggtaacctacaaagtatctcttctatgagctcaaatgaaa |
210 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1551 |
ttagaaattagggatttctatgacttgctaatgtatcgaagttgaaggaagagcttcacaggtaacctacaaagtatctcttctatgagctcaaatgaaa |
1650 |
T |
|
| Q |
211 |
gagtcggcaacgatggtgcgtgaaggttatagatgaaaggggtgttgttgttgtcatctcctttcctcactgtcgtcattctcagttctagacggaaccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1651 |
gagtcggcaacgatggtgcgtgaaggttatagatgaaaggggtg--gttgttgtcatctcctttcctcactgtcgtcattctcagttctagacggaaccc |
1748 |
T |
|
| Q |
311 |
nnnnnnnnnnnnnatttctagaaaaactgaatgcannnnnnngggtgtaaaagcatgaaacatagatcaccatggttgaagaacaaaattccaacctagt |
410 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |
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| T |
1749 |
ttttttgttttttatttgaagaaaaactgaatgcatttttttgggtgtaaaagcatgaaacttagatcaccatggttgaagaacaaaatttcaaccgagt |
1848 |
T |
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| Q |
411 |
aattctataataatcggcaattggatatt |
439 |
Q |
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| T |
1849 |
aattctataataaccggcaattggatatt |
1877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 41974143 - 41974569
Alignment:
| Q |
11 |
ataatatgtgagaacgaatttgtgtgagagattggagaagcttaaggtgtgaatgtgacgcgtggttgacagacgaatgtgttttttggcgaaattggga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41974143 |
ataagatgtgagaacgaatttgtgtgagagattggagaagcttaaggtgtgaatgtgacgcgtggtcgacagacgaatgtgttttttggcgaaattggga |
41974242 |
T |
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| Q |
111 |
ttagaaattagggatttctatgacttgcaaacgtatcgaagttgaaggaagagcttcacaggtaacctacaaagtatctcttctatgagctcaaatgaaa |
210 |
Q |
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| T |
41974243 |
ttagaaattagggatttctatgacttgctaatgtatcgaagttgaaggaagagcttcacaggtaacctacaaagtatctcttctatgagctcaaatgaaa |
41974342 |
T |
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| Q |
211 |
gagtcggcaacgatggtgcgtgaaggttatagatgaaaggggtgttgttgttgtcatctcctttcctcactgtcgtcattctcagttctagacggaaccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41974343 |
gagtcggcaacgatggtgcgtgaaggttatagatgaaaggggtg--gttgttgtcatctcctttcctcactgtcgtcattctcagttctagacggaaccc |
41974440 |
T |
|
| Q |
311 |
nnnnnnnnnnnnnatttctagaaaaactgaatgcannnnnnngggtgtaaaagcatgaaacatagatcaccatggttgaagaacaaaattccaacctagt |
410 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |
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| T |
41974441 |
ttttttgttttttatttgaagaaaaactgaatgcatttttttgggtgtaaaagcatgaaacttagatcaccatggttgaagaacaaaatttcaaccgagt |
41974540 |
T |
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| Q |
411 |
aattctataataatcggcaattggatatt |
439 |
Q |
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| T |
41974541 |
aattctataataaccggcaattggatatt |
41974569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 988755 - 988653
Alignment:
| Q |
72 |
gtggttgacagacgaatgtgttttttggcgaaattgggattagaaattagggatttctatgacttgcaaacgtatcgaagttgaaggaagagcttcacag |
171 |
Q |
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||||||||||| | || ||| ||||| ||||| ||||||| ||| |||| || ||| ||||||||||| | |||| |||||||||| ||||||||||| |
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| T |
988755 |
gtggttgacaggctaaggtgcttttttgcgaatttgggatcagagattaaagaattccatgacttgcaagagcatcggagttgaaggaggagcttcacag |
988656 |
T |
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| Q |
172 |
gta |
174 |
Q |
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||| |
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| T |
988655 |
gta |
988653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1003775 - 1003726
Alignment:
| Q |
130 |
atgacttgcaaacgtatcgaagttgaaggaagagcttcacaggtaaccta |
179 |
Q |
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| T |
1003775 |
atgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaaccta |
1003726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 1021772 - 1021723
Alignment:
| Q |
130 |
atgacttgcaaacgtatcgaagttgaaggaagagcttcacaggtaaccta |
179 |
Q |
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||||||||||| || ||||||||||||||| ||||||||| ||||||||| |
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| T |
1021772 |
atgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaaccta |
1021723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 803979 - 804039
Alignment:
| Q |
117 |
attagggatttctatgacttgcaaacgtatcgaagttgaaggaagagcttcacaggtaacc |
177 |
Q |
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||||| || ||| |||||||||||||| |||| |||||||| |||| |||||||||||||| |
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| T |
803979 |
attagagaattccatgacttgcaaacgcatcggagttgaagtaagaacttcacaggtaacc |
804039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 22672847 - 22672996
Alignment:
| Q |
70 |
gcgtggttgacagacgaatgtgttttttggcgaaattgggattagaaattagggatttctatgacttgcaaacgtatcgaagttgaaggaagagcttcac |
169 |
Q |
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||||||||||||| | || ||| || || ||||| ||| ||| ||| ||||| || ||| |||||||||| || || | || ||||||| ||||||||| |
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| T |
22672847 |
gcgtggttgacaggctaaggtgcttcttagcgaatttgcgatcagagattagagaattccatgacttgcaggcgcattggagctgaaggaggagcttcac |
22672946 |
T |
|
| Q |
170 |
aggtaacctacaaagtatctcttctatgagctcaaatgaaagagtcggca |
219 |
Q |
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|||||||||| ||| || ||||| ||||| ||||| | |||||| |||| |
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| T |
22672947 |
cggtaacctactaaggatttcttcaatgagatcaaaaggaagagttggca |
22672996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 20020573 - 20020627
Alignment:
| Q |
145 |
atcgaagttgaaggaagagcttcacaggtaacctacaaagtatctcttctatgag |
199 |
Q |
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| T |
20020573 |
atcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgag |
20020627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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