View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_low_2 (Length: 644)
Name: NF1270_low_2
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 72 - 629
Target Start/End: Original strand, 31389074 - 31389628
Alignment:
| Q |
72 |
aaactttaatacaaaacacttgatacttaaaacaatagtcacaaactatcaaatattggtgatagcatccccccaccatatctcttcctatacaagacca |
171 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389074 |
aaactataatacaaaacacttgatacttaaaacaacagtcacaaactatcaaatattggtgatagcatccccccaccatatctcttcctatacaagacca |
31389173 |
T |
|
| Q |
172 |
tagcacaaccacataaatacttgtgatgccaaatatttcata-ctcaaaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389174 |
tagcacaaccacataaatacttgtgatgccaaatatttcatacctcaaaatgcagtttcattagcctatctactcatcacatgccacatgtcactacatg |
31389273 |
T |
|
| Q |
271 |
cataattagccacatatctataattgctatatctcattcccactctcnnnnnnncaatgcaataacaaaacaacatcctcatcaaaacttttcaacataa |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389274 |
cataattagccacatatctataattgctatatctcattcccactctctttttttcaatgcaataacaaaacaacatcctcatcaaaacttttcaacataa |
31389373 |
T |
|
| Q |
371 |
nnnnnnnnncagccatggaaactagtatagcatgttactccagtggtgcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctc |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31389374 |
tttttttttcagccatggaaactagtatagcatgttactccagtggtgcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccctc |
31389473 |
T |
|
| Q |
471 |
ttctgccttcagggtatgtactatagtataatcttaaaagttatttatttcaatgattaatttattggaaagttcttttatgcactttattctatca-ta |
569 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| | || ||||||||||||||||||| ||||||||||| | |||||||||||||||||||| || |
|
|
| T |
31389474 |
ttctgccttcagggtatgtacaatag-----tcttaagaattttttatttcaatgattaattaattggaaagttatgttatgcactttattctatcatta |
31389568 |
T |
|
| Q |
570 |
tgtaacttattctacgtgtgatatttatgctttcatttaattgaagaagaatactgacat |
629 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
31389569 |
tgtaacttattctacgtgtgatatttatgcttttatttaattgaagaagaatactaacat |
31389628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University