View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_20 (Length: 466)
Name: NF1270_low_20
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 136 - 454
Target Start/End: Original strand, 23345761 - 23346079
Alignment:
| Q |
136 |
gatgaagtgatggaagaaagaatacattcaagagcttctaatcaatctaagaaatacaacgatgtgttagattcttttctggatcttgtcaatcaagaga |
235 |
Q |
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| T |
23345761 |
gatgaagtgatggaagaaagaatacattcaagagcttctaatcaatctaagaaatacaacgatgtgttagattcttttctggatcttgtcaatcaagaga |
23345860 |
T |
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| Q |
236 |
gttccgaattgtgtcgccagccatgacgtcttacacttatttacagtaagtatttcacttagcattccaaattagacttgtttcaattttctatctaatt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23345861 |
gttccgaattgtgtcgccagccatgacgtcttacacttatttacagtaagtatttcacttagcattccaaattagacttgtttcaattttctatctaatt |
23345960 |
T |
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| Q |
336 |
cttgctatcgaattctgttcttagattctgttagccgtattagcgtttgattattaattctattctcgtactggtaaacttttacctactgatctacgac |
435 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23345961 |
cttgctatcgaattctggtcttagattctgttagccgtattagcgtttgattattaattctattctcgtactggtaaacttttacctactgatctacgac |
23346060 |
T |
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| Q |
436 |
cacgatgattgatgattca |
454 |
Q |
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||||||||| ||||||||| |
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| T |
23346061 |
cacgatgatcgatgattca |
23346079 |
T |
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