View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_low_21 (Length: 462)
Name: NF1270_low_21
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 29 - 449
Target Start/End: Complemental strand, 11616779 - 11616366
Alignment:
| Q |
29 |
aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11616779 |
aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataacc |
11616680 |
T |
|
| Q |
129 |
aaaagagaaacaaaatcatgtaaatttttattcaaaaatttctcttatacatattgataatgtaagnnnnnnnggttcattcttaattagaattgttaaa |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
11616679 |
aaaagagaaacaaaataatgtaaatttttattcaaaaaattttcttatacttattgataatgtaagaaaaaatggttcatacttaattagaatagttaaa |
11616580 |
T |
|
| Q |
229 |
acttttcaggtaaacaagttttgacaccatgataaaagtcaattcttctgaaaggtatacgtgaccnnnnnnnnnnnnnngtagaaaatgctaatgaatt |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11616579 |
acttttcaggtaaacaagttttgacacgaagataaaggtcaatttttctgaaaggtatatgtgac-------ttttttttgtagaaaatgctaatgaatt |
11616487 |
T |
|
| Q |
329 |
atcacatcaggtcatttatgagtgtcacatttgtttatgataattttatcaaattaatcttatcaaatattacagtggttacaattatcataaatacaaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11616486 |
atcacatcaggtcatttatgagtgtcacatttgtttatgacaattttatcaaattaatcttatcaaatattactgtggttacaattatcataaatacaaa |
11616387 |
T |
|
| Q |
429 |
ataaaatatatcgacttagaa |
449 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11616386 |
gtaaaatatatcgacttagaa |
11616366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 29 - 446
Target Start/End: Original strand, 11633456 - 11633867
Alignment:
| Q |
29 |
aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11633456 |
aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataacc |
11633555 |
T |
|
| Q |
129 |
aaaagagaaacaaaatcatgtaaatttttattcaaaaatttctcttatacatattgataatgtaagnnnnnnnggttcattcttaattagaattgttaaa |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
11633556 |
aaaagagaaacaaaataatgtaaatttttattcaaaaaattttcttatacttattgataatgtaagaaaaaatggttcatacttaattagaatagttaaa |
11633655 |
T |
|
| Q |
229 |
acttttcaggtaaacaagttttgacaccatgataaaagtcaattcttctgaaaggtatacgtgaccnnnnnnnnnnnnnngtagaaaatgctaatgaatt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11633656 |
acttttcaggtaaacaagttttgacaccaagataaaggtcaatttttctgaaaggtatatgtgac------tttttttttgtagaaaatgctaatgaatt |
11633749 |
T |
|
| Q |
329 |
atcacatcaggtcatttatgagtgtcacatttgtttatgataattttatcaaattaatcttatcaaatattacagtggttacaattatcataaatacaaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11633750 |
atcacatcaggtcatttatgagtgtcacatttgtttatgacaattttatcaaattaatcttatcaaatattattgtggttacaattatcataaatacaaa |
11633849 |
T |
|
| Q |
429 |
ataaaatatatcgactta |
446 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11633850 |
gtaaaatatatcgactta |
11633867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Complemental strand, 11842607 - 11842575
Alignment:
| Q |
407 |
ttacaattatcataaatacaaaataaaatatat |
439 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
11842607 |
ttacaattatcataaatgcaaaataaaatatat |
11842575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University