View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270_low_22 (Length: 459)

Name: NF1270_low_22
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270_low_22
NF1270_low_22
[»] chr6 (2 HSPs)
chr6 (29-446)||(11616366-11616779)
chr6 (29-443)||(11633456-11633867)
[»] chr2 (1 HSPs)
chr2 (404-436)||(11842575-11842607)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 29 - 446
Target Start/End: Complemental strand, 11616779 - 11616366
Alignment:
Q  29 aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataaca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11616779 aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataacc 11616680  T
Q  129 aaaagagaaacaaaatcatgtaaatttttattcaaaaatttctcttatacatattgataatgtaagnnnnnnnggttcattcttaattagaattgttaaa 228  Q
    |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||       ||||||| |||||||||||| ||||||    
T  11616679 aaaagagaaacaaaataatgtaaatttttattcaaaaaattttcttatacttattgataatgtaagaaaaaatggttcatacttaattagaatagttaaa 11616580  T
Q  229 acttttcaggtaaacaagttttgacaccatgataaaagtcaattcttctgaaaggtatacgtgaccnnnnnnnnnnngtagaaaatgctaatgaattatc 328  Q
    ||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||| |||||            |||||||||||||||||||||||    
T  11616579 acttttcaggtaaacaagttttgacacgaagataaaggtcaatttttctgaaaggtatatgtgac----ttttttttgtagaaaatgctaatgaattatc 11616484  T
Q  329 acatcaggtcatttatgagtgtcacatttgtttatgataattttatcaaattaatcttatcaaatattacagtggttacaattatcataaatacaaaata 428  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  11616483 acatcaggtcatttatgagtgtcacatttgtttatgacaattttatcaaattaatcttatcaaatattactgtggttacaattatcataaatacaaagta 11616384  T
Q  429 aaatatatcgacttagaa 446  Q
    ||||||||||||||||||    
T  11616383 aaatatatcgacttagaa 11616366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 29 - 443
Target Start/End: Original strand, 11633456 - 11633867
Alignment:
Q  29 aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataaca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11633456 aaggttttccttcattatcaacattaccacagtctccacaaatcatgctccaaaagttttccatcttttagctttactttgttgctcaaaatctataacc 11633555  T
Q  129 aaaagagaaacaaaatcatgtaaatttttattcaaaaatttctcttatacatattgataatgtaagnnnnnnnggttcattcttaattagaattgttaaa 228  Q
    |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||       ||||||| |||||||||||| ||||||    
T  11633556 aaaagagaaacaaaataatgtaaatttttattcaaaaaattttcttatacttattgataatgtaagaaaaaatggttcatacttaattagaatagttaaa 11633655  T
Q  229 acttttcaggtaaacaagttttgacaccatgataaaagtcaattcttctgaaaggtatacgtgaccnnnnnnnnnnngtagaaaatgctaatgaattatc 328  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||            |||||||||||||||||||||||    
T  11633656 acttttcaggtaaacaagttttgacaccaagataaaggtcaatttttctgaaaggtatatgtgac---tttttttttgtagaaaatgctaatgaattatc 11633752  T
Q  329 acatcaggtcatttatgagtgtcacatttgtttatgataattttatcaaattaatcttatcaaatattacagtggttacaattatcataaatacaaaata 428  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  11633753 acatcaggtcatttatgagtgtcacatttgtttatgacaattttatcaaattaatcttatcaaatattattgtggttacaattatcataaatacaaagta 11633852  T
Q  429 aaatatatcgactta 443  Q
    |||||||||||||||    
T  11633853 aaatatatcgactta 11633867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 11842607 - 11842575
Alignment:
Q  404 ttacaattatcataaatacaaaataaaatatat 436  Q
    ||||||||||||||||| |||||||||||||||    
T  11842607 ttacaattatcataaatgcaaaataaaatatat 11842575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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