View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270_low_25 (Length: 439)

Name: NF1270_low_25
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270_low_25
NF1270_low_25
[»] chr7 (2 HSPs)
chr7 (95-344)||(32325882-32326131)
chr7 (343-430)||(6933326-6933413)
[»] chr3 (1 HSPs)
chr3 (95-344)||(18730918-18731167)
[»] chr4 (3 HSPs)
chr4 (343-430)||(509387-509474)
chr4 (343-430)||(18088461-18088548)
chr4 (343-430)||(9071990-9072075)
[»] chr1 (3 HSPs)
chr1 (343-430)||(15758454-15758541)
chr1 (163-223)||(24489094-24489154)
chr1 (163-223)||(24497428-24497488)
[»] chr5 (2 HSPs)
chr5 (343-430)||(21547836-21547923)
chr5 (163-223)||(34290730-34290790)
[»] chr6 (3 HSPs)
chr6 (347-430)||(1023932-1024015)
chr6 (360-430)||(30234554-30234624)
chr6 (343-384)||(30234511-30234552)
[»] scaffold0002 (1 HSPs)
scaffold0002 (343-428)||(171067-171152)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 32326131 - 32325882
Alignment:
Q  95 atttggtcatccacactctcaatggtttgagtgcagattatcgtgagatctctacagctttacgcagtagggaaactccagttgatttcgctcaactaca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32326131 atttggtcatccacactctcaatggtttgagtgcagattatcgtgagatctctacagctttacgcagtagggaaactccagttgatttcgctcaactaca 32326032  T
Q  195 tgaaaaactcatggattttgaaatcatcctacatcgcgataatttggcacaatcagatcctattgttgccacagccaatgctgcaaaccactatagaggg 294  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32326031 tgaaaaactcatggattttgaaatcatcctacatcgtgataatttggcacaatcagatcctattgttgccacagccaatgctgcaaaccactatagaggg 32325932  T
Q  295 gtgcaaccctcgccaaatcacaaacagcaaggatctcgcacaccttacca 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32325931 gtgcaaccctcgccaaatcacaaacagcaaggatctcgcacaccttacca 32325882  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 6933413 - 6933326
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  6933413 caaccaacacagtcctctgttcttggggcagaagctatttgcttagccttacatccatcccaaggtatcatttctaatacatctgtgg 6933326  T

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Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 18731167 - 18730918
Alignment:
Q  95 atttggtcatccacactctcaatggtttgagtgcagattatcgtgagatctctacagctttacgcagtagggaaactccagttgatttcgctcaactaca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18731167 atttggtcatccacactctcaatggtttgagtgcagattatcgtgagatctctacagctttgcgcagtagggaaactccagttgatttcgctcaactaca 18731068  T
Q  195 tgaaaaactcatggattttgaaatcatcctacatcgcgataatttggcacaatcagatcctattgttgccacagccaatgctgcaaaccactatagaggg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18731067 tgaaaaactcatggattttgaaatcatcctacatcgcgataatttggcacaatcagatcctattgttgccacaaccaatgctgcaaaccactatagaggg 18730968  T
Q  295 gtgcaaccctcgccaaatcacaaacagcaaggatctcgcacaccttacca 344  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  18730967 gtacaaccctcgccaaatcacaaacaacaaggatctcgcacaccttacca 18730918  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 509474 - 509387
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  509474 caaccaacacagtcctctgttcttggggcagaagctatttgcttagccttacatccatcccaaggtatcatttctaatacatctgtgg 509387  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 343 - 430
Target Start/End: Original strand, 18088461 - 18088548
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18088461 caaccaacacagtcctctgttcttggggcagaagctatttgcttagccttacatccatcccaaggtatcatttctaatacatctgtgg 18088548  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 9072075 - 9071990
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    ||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||||| |||||    
T  9072075 caaccaacacagtccact--tcttggggcagaagctatttacttagctttacatctatctcaaggtatcatttgtaatacatttgtgg 9071990  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 15758541 - 15758454
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15758541 caaccaacacagtcctttgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatttctaatacatctgtgg 15758454  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 24489154 - 24489094
Alignment:
Q  163 agggaaactccagttgatttcgctcaactacatgaaaaactcatggattttgaaatcatcc 223  Q
    |||||||| ||| |||  || ||| |||| ||||||||||||||||||||||||| |||||    
T  24489154 agggaaaccccaattgtctttgctgaacttcatgaaaaactcatggattttgaaaccatcc 24489094  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 24497488 - 24497428
Alignment:
Q  163 agggaaactccagttgatttcgctcaactacatgaaaaactcatggattttgaaatcatcc 223  Q
    |||||||| ||| |||  || ||| |||| ||||||||||||||||||||||||| |||||    
T  24497488 agggaaaccccaattgtctttgctgaacttcatgaaaaactcatggattttgaaaccatcc 24497428  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 21547923 - 21547836
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  21547923 caaccaacacagtcctatgttcttggggcagaagctatttgcttagctttacatccatcccaatgtatcatttctaatacatctgtgg 21547836  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 34290730 - 34290790
Alignment:
Q  163 agggaaactccagttgatttcgctcaactacatgaaaaactcatggattttgaaatcatcc 223  Q
    |||||||| ||| |||  || ||| |||| ||||||||||||||||||||||||| |||||    
T  34290730 agggaaaccccaattgtctttgctgaacttcatgaaaaactcatggattttgaaaccatcc 34290790  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 430
Target Start/End: Complemental strand, 1024015 - 1023932
Alignment:
Q  347 caacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    |||||||||||||| ||||||||  |||||||||||||||| ||||||||| |||| |||||||||| |||||||||| |||||    
T  1024015 caacacagtcctctattcttgggatagaagctatttgcttaactttacatctatcctaaggtatcatttctaatacatatgtgg 1023932  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 430
Target Start/End: Original strand, 30234554 - 30234624
Alignment:
Q  360 tgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgtgg 430  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  30234554 tgttcttggtgcataagctatttgcttagctttacatccatcccaaggcatgatttctaatacatctgtgg 30234624  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 30234511 - 30234552
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgc 384  Q
    |||||||||||||||| ||||||||| ||| |||||||||||    
T  30234511 caaccaacacagtcctatgttcttggtgcataagctatttgc 30234552  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 171152 - 171067
Alignment:
Q  343 caaccaacacagtcctctgttcttggggcagaagctatttgcttagctttacatccatcccaaggtatcatgtctaatacatctgt 428  Q
    ||||| ||||| || || ||||| || || ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  171152 caacccacacaatcttcggttctcggcgcggaagcaatttgcttggctttacatccatcccagggtatcatttctaatacatctgt 171067  T

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