View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_low_27 (Length: 429)
Name: NF1270_low_27
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 3325015 - 3324670
Alignment:
| Q |
1 |
tggatgtcaccaagcatgaattccctaccctttatatccccatttgagcgaagttcattgtcactagtttccttggatgtaactactaacaatatgggct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3325015 |
tggatgtcaccaagcatgaattccctaccctgtatatccccatttgagcgaaattcattgtcaccagtttccttggatttaactactaacaatatgggct |
3324916 |
T |
|
| Q |
101 |
atcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagannnnnnnnnaa |
200 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3324915 |
atcaatcaccaatgcttcccaatctttcaaaacatagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaagaaacttttttga |
3324816 |
T |
|
| Q |
201 |
tgatctatatgatgtaagttttaccaagttggaaacaatatcacatgcttcacggatcttagaaatttcctggagatcgcttttgattggattaggaagt |
300 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324815 |
tgatctatatgatgtaagttttaccaagttcgaaacaatatcacatgcatcacgaatcttagaaatttcctggagatcgcttttgattggattaggaagt |
3324716 |
T |
|
| Q |
301 |
tgtagcatggccatcaacactcttggcaagaacatatcacaggttc |
346 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3324715 |
tgcagcatggccatcaacactcttggcaagaacatatcacaggttc |
3324670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 3398482 - 3398289
Alignment:
| Q |
54 |
ttcattgtcactagtttccttggatgtaactactaacaatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaa |
153 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||| ||||||| ||||||||||||||||||| || ||||||||| ||| || |||||||| ||||| |
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| T |
3398482 |
ttcattgtctctagtttccttgcatgcggaaagtaataatatggactatcaatcaccaatgcttaccgtcctttcaaagcttcgatgtgtttggtttcaa |
3398383 |
T |
|
| Q |
154 |
tgccgatcagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatg |
247 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||| |||||||||||| |||||||| |
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|
| T |
3398382 |
tgccagtcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatg |
3398289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 31176086 - 31176275
Alignment:
| Q |
54 |
ttcattgtcactagtttccttggatgtaactactaacaatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaa |
153 |
Q |
| |
|
||||||||| |||||||| ||||||||| | ||| ||||||| |||||||||||| |||||| || ||||||||| ||| || |||||||| ||||| |
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| T |
31176086 |
ttcattgtctctagtttctttggatgtagagagtaataatatggactatcaatcaccgatgcttaccgtcctttcaaagcttcgatgtgtttgggttcaa |
31176185 |
T |
|
| Q |
154 |
tgccgatcagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatca |
243 |
Q |
| |
|
|| | ||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||| |||||||||||| |||| |
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|
| T |
31176186 |
tgtcactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatca |
31176275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 3375369 - 3375424
Alignment:
| Q |
127 |
tcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaaga |
182 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||||||| ||| |||||||| |
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| T |
3375369 |
tcaaaacatagaagtgtttgggttcaatgccactcagagattcgactaactcaaga |
3375424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 3262380 - 3262300
Alignment:
| Q |
266 |
tttcctggagatcgcttttgattggattaggaagttgtagcatggccatcaacactcttggcaagaacatatcacaggttc |
346 |
Q |
| |
|
|||||| ||||||||| |||||| || |||||||||| | | | |||||| |||||||| |||| |||||||||||||| |
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|
| T |
3262380 |
tttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcacaggttc |
3262300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 7164573 - 7164485
Alignment:
| Q |
95 |
tgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaa |
183 |
Q |
| |
|
|||||| || |||||||||| ||| | ||||||||||||||||| ||||||| | ||||| || ||| | ||||||| ||||||||| |
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| T |
7164573 |
tgggctttctatcaccaatgattcgtagcctttcaaaacttagaactgtttgggtacaatgtcggtcaaaagttcaactaactcaagaa |
7164485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 20812516 - 20812710
Alignment:
| Q |
54 |
ttcattgtcactagtttccttggatgtaactactaacaatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaa |
153 |
Q |
| |
|
||||||||| |||||||| ||||||||| | ||| ||||||| ||||||||||| |||||| || ||| ||||| ||| || |||||||| ||||| |
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|
| T |
20812516 |
ttcattgtctctagtttctttggatgtagagagtaataatatggaatatcaatcaccgatgcttaccgtcctatcaaagcttcgatgtgtttggtttcaa |
20812615 |
T |
|
| Q |
154 |
tgccgatcagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatgc |
248 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||| |||||||||||| ||||||||| |
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| T |
20812616 |
tgccactcagagaatcaacttactcaagaattaagaagatatattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatgc |
20812710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 20838871 - 20839064
Alignment:
| Q |
54 |
ttcattgtcactagtttccttggatgtaactactaacaatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaa |
153 |
Q |
| |
|
||||||||| |||||||| ||||||||| | ||| ||||||| |||||||||||| ||| || || ||| ||||| ||| || |||||||| ||||| |
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|
| T |
20838871 |
ttcattgtctctagtttctttggatgtagagagtaataatatggactatcaatcaccgatggttaccgtcctatcaaagcttcgatgtgtttggtttcaa |
20838970 |
T |
|
| Q |
154 |
tgccgatcagagattcaactgactcaagaattaagannnnnnnnnaatgatctatatgatgtaagttttaccaagttggaaacaatatcacatg |
247 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||| |||||||||||| |||||||| |
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|
| T |
20838971 |
tgccactcagagaatcaacttactcaagaattaagaagatttattgatgatctatatgatgtgaattttactgagttggaaacaacatcacatg |
20839064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 12599013 - 12598886
Alignment:
| Q |
55 |
tcattgtcactagtttccttggatgtaactactaacaatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaat |
154 |
Q |
| |
|
|||||||| |||| |||||||||| || | ||| ||||||||||||| |||| || | ||| | | || ||||||||||||||||||||| |||||| |
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|
| T |
12599013 |
tcattgtctttagtgtccttggatgcaaagagtaataatatgggctatcgatcatcagtacttacaagtctctcaaaacttagaagtgtttgggttcaat |
12598914 |
T |
|
| Q |
155 |
gccgatcagagattcaactgactcaaga |
182 |
Q |
| |
|
||| ||||||||||||| |||||||| |
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|
| T |
12598913 |
gccactcagagattcaaccaactcaaga |
12598886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 12598838 - 12598803
Alignment:
| Q |
312 |
catcaacactcttggcaagaacatatcacaggttct |
347 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
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|
| T |
12598838 |
catcgacactcttggcaagaacatatcacaggttct |
12598803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 32410982 - 32410919
Alignment:
| Q |
123 |
cctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaatta |
186 |
Q |
| |
|
||||||| |||| |||| ||||||| | |||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
32410982 |
cctttcacaactcagaactgtttgggtacaatgccgctcaaagattcaactaactcaagaatta |
32410919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 31059733 - 31059636
Alignment:
| Q |
91 |
aatatgggctatcaatcaccaatgcttcccaacctttcaaaacttagaagtgtttggattcaatgccgatcagagattcaactgactcaagaattaaga |
189 |
Q |
| |
|
|||||| | |||| |||||||| |||| || |||||||||| ||||| || |||| | ||||||| |||||||||||||| ||||||||||||||| |
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| T |
31059733 |
aatatgaggtatctatcaccaacgcttatcatcctttcaaaatatagaattgcttgggt-caatgccactcagagattcaactaactcaagaattaaga |
31059636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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