View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270_low_28 (Length: 425)

Name: NF1270_low_28
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270_low_28
NF1270_low_28
[»] chr5 (18 HSPs)
chr5 (245-373)||(43554512-43554633)
chr5 (249-318)||(39695995-39696064)
chr5 (273-381)||(36577616-36577717)
chr5 (345-384)||(6247689-6247728)
chr5 (321-383)||(7997108-7997171)
chr5 (338-397)||(38464301-38464361)
chr5 (314-384)||(21576686-21576756)
chr5 (338-384)||(17123119-17123165)
chr5 (285-384)||(26205695-26205789)
chr5 (321-384)||(2419921-2419985)
chr5 (263-362)||(21137697-21137789)
chr5 (331-381)||(30183624-30183675)
chr5 (337-384)||(39695952-39695999)
chr5 (314-384)||(43564929-43564999)
chr5 (350-384)||(2548464-2548498)
chr5 (350-384)||(14674333-14674367)
chr5 (261-319)||(25863210-25863268)
chr5 (321-381)||(36642696-36642755)
[»] chr2 (23 HSPs)
chr2 (255-384)||(23354582-23354711)
chr2 (255-383)||(23354926-23355054)
chr2 (249-384)||(25544475-25544611)
chr2 (285-384)||(11307935-11308033)
chr2 (250-384)||(38919201-38919335)
chr2 (262-318)||(24011043-24011099)
chr2 (314-384)||(37419802-37419872)
chr2 (321-384)||(18889520-18889584)
chr2 (314-381)||(37411188-37411255)
chr2 (338-384)||(18840954-18841001)
chr2 (337-384)||(25072754-25072801)
chr2 (314-384)||(28596517-28596587)
chr2 (314-383)||(2438661-2438730)
chr2 (350-384)||(18420364-18420398)
chr2 (253-319)||(19573976-19574042)
chr2 (331-384)||(26769586-26769640)
chr2 (253-319)||(37986777-37986843)
chr2 (255-300)||(22085004-22085049)
chr2 (262-347)||(30563416-30563501)
chr2 (337-385)||(44860401-44860450)
chr2 (289-384)||(12601142-12601238)
chr2 (321-388)||(17651617-17651685)
chr2 (321-384)||(41849355-41849419)
[»] chr8 (23 HSPs)
chr8 (241-384)||(13009423-13009566)
chr8 (261-384)||(39820435-39820546)
chr8 (250-343)||(13845229-13845322)
chr8 (253-383)||(44067514-44067644)
chr8 (245-384)||(40063941-40064080)
chr8 (314-384)||(29510234-29510304)
chr8 (323-384)||(38487158-38487220)
chr8 (313-384)||(14513109-14513181)
chr8 (321-384)||(36450695-36450758)
chr8 (245-386)||(2035729-2035868)
chr8 (323-381)||(12559044-12559103)
chr8 (322-384)||(30067969-30068032)
chr8 (285-384)||(15816059-15816158)
chr8 (347-384)||(16641910-16641947)
chr8 (308-384)||(33389296-33389372)
chr8 (285-384)||(3911140-3911240)
chr8 (262-314)||(35431140-35431192)
chr8 (331-384)||(8343391-8343445)
chr8 (264-330)||(16869699-16869765)
chr8 (347-384)||(25566911-25566948)
chr8 (262-314)||(1676719-1676771)
chr8 (337-384)||(8343037-8343085)
chr8 (321-384)||(24413500-24413563)
[»] chr4 (20 HSPs)
chr4 (249-384)||(3144588-3144717)
chr4 (253-381)||(20743210-20743339)
chr4 (266-384)||(17876166-17876284)
chr4 (254-384)||(31243477-31243608)
chr4 (255-373)||(6273944-6274062)
chr4 (253-384)||(53381531-53381653)
chr4 (285-384)||(944603-944697)
chr4 (253-384)||(7012064-7012196)
chr4 (253-384)||(24343505-24343631)
chr4 (308-390)||(3947696-3947777)
chr4 (314-384)||(23292927-23292997)
chr4 (252-373)||(32910548-32910670)
chr4 (321-384)||(18513176-18513240)
chr4 (275-319)||(23386166-23386210)
chr4 (322-384)||(35161092-35161154)
chr4 (331-384)||(19482743-19482797)
chr4 (347-389)||(40784034-40784076)
chr4 (307-362)||(10133749-10133805)
chr4 (262-306)||(39507127-39507171)
chr4 (264-304)||(49659533-49659573)
[»] chr7 (21 HSPs)
chr7 (245-384)||(29812599-29812733)
chr7 (262-384)||(23751907-23752017)
chr7 (250-384)||(7133213-7133342)
chr7 (253-380)||(43249991-43250118)
chr7 (253-384)||(4017730-4017855)
chr7 (308-384)||(5409772-5409847)
chr7 (253-384)||(38804490-38804616)
chr7 (314-384)||(598256-598326)
chr7 (337-384)||(32287404-32287452)
chr7 (314-384)||(21864856-21864926)
chr7 (314-384)||(21880200-21880270)
chr7 (262-320)||(17780078-17780136)
chr7 (309-384)||(32093955-32094030)
chr7 (321-373)||(12278889-12278942)
chr7 (249-347)||(22683720-22683820)
chr7 (266-319)||(23930230-23930283)
chr7 (336-384)||(40131940-40131989)
chr7 (316-384)||(41229238-41229307)
chr7 (348-385)||(49107887-49107924)
chr7 (262-314)||(12278842-12278894)
chr7 (262-306)||(32855361-32855405)
[»] chr3 (27 HSPs)
chr3 (262-384)||(52369782-52369905)
chr3 (236-384)||(25074768-25074913)
chr3 (253-380)||(14223793-14223914)
chr3 (253-319)||(25892458-25892524)
chr3 (256-384)||(27903633-27903756)
chr3 (253-384)||(8903430-8903553)
chr3 (326-384)||(21211353-21211412)
chr3 (253-384)||(15864831-15864950)
chr3 (237-311)||(34189409-34189483)
chr3 (321-384)||(14216958-14217021)
chr3 (321-384)||(14223087-14223150)
chr3 (314-384)||(41961580-41961650)
chr3 (315-385)||(21149116-21149186)
chr3 (250-347)||(25326421-25326512)
chr3 (349-382)||(21367349-21367382)
chr3 (347-384)||(49651717-49651754)
chr3 (253-309)||(1830341-1830397)
chr3 (314-384)||(14209172-14209242)
chr3 (321-383)||(24204983-24205046)
chr3 (314-384)||(55401123-55401193)
chr3 (258-312)||(3730167-3730221)
chr3 (315-384)||(37077418-37077488)
chr3 (262-319)||(12704652-12704709)
chr3 (336-384)||(17276796-17276845)
chr3 (308-384)||(27505294-27505369)
chr3 (336-384)||(27277781-27277829)
chr3 (337-384)||(34185053-34185101)
[»] chr6 (23 HSPs)
chr6 (262-384)||(34446572-34446689)
chr6 (253-317)||(6389741-6389805)
chr6 (262-319)||(17168458-17168515)
chr6 (264-363)||(2153838-2153937)
chr6 (262-384)||(26247433-26247549)
chr6 (340-384)||(6389806-6389850)
chr6 (237-384)||(34894969-34895111)
chr6 (314-384)||(34595182-34595252)
chr6 (314-384)||(4877991-4878060)
chr6 (262-324)||(19602171-19602233)
chr6 (253-384)||(9107300-9107431)
chr6 (337-385)||(31959220-31959269)
chr6 (347-384)||(32839572-32839609)
chr6 (314-384)||(1191644-1191711)
chr6 (336-382)||(9025448-9025495)
chr6 (337-382)||(8389411-8389457)
chr6 (331-384)||(8776909-8776963)
chr6 (348-386)||(27903961-27903999)
chr6 (249-314)||(13689193-13689258)
chr6 (308-384)||(17327591-17327666)
chr6 (245-318)||(30781290-30781363)
chr6 (337-384)||(4388150-4388198)
chr6 (308-383)||(12696372-12696446)
[»] scaffold0652 (1 HSPs)
scaffold0652 (314-385)||(402-473)
[»] chr1 (18 HSPs)
chr1 (262-384)||(42004883-42004999)
chr1 (308-383)||(1486646-1486720)
chr1 (249-317)||(39101179-39101247)
chr1 (247-313)||(6573981-6574047)
chr1 (308-384)||(20157285-20157361)
chr1 (336-384)||(34741916-34741964)
chr1 (314-384)||(18190049-18190119)
chr1 (330-384)||(18556386-18556441)
chr1 (249-296)||(23440004-23440051)
chr1 (314-384)||(32899938-32900009)
chr1 (314-384)||(37598879-37598949)
chr1 (314-383)||(42359391-42359460)
chr1 (262-319)||(6936395-6936452)
chr1 (336-384)||(19562557-19562605)
chr1 (336-380)||(23219608-23219653)
chr1 (351-388)||(23705417-23705454)
chr1 (347-384)||(42325640-42325677)
chr1 (253-384)||(47989496-47989626)
[»] scaffold0003 (2 HSPs)
scaffold0003 (285-384)||(241624-241723)
scaffold0003 (335-384)||(236915-236965)
[»] scaffold0049 (1 HSPs)
scaffold0049 (265-384)||(56932-57052)
[»] scaffold0168 (1 HSPs)
scaffold0168 (350-384)||(21372-21406)
[»] scaffold0128 (1 HSPs)
scaffold0128 (337-386)||(32774-32824)
[»] scaffold0199 (1 HSPs)
scaffold0199 (262-314)||(1956-2008)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 245 - 373
Target Start/End: Original strand, 43554512 - 43554633
Alignment:
Q  245 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 344  Q
    ||||||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  43554512 cacggacac-gacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc------ggacaccgacgcgtgtccga 43554604  T
Q  345 cacgggacacacctaatccgagaagtgtc 373  Q
    |||||||||| ||||||||||||||||||    
T  43554605 cacgggacacgcctaatccgagaagtgtc 43554633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 39696064 - 39695995
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 318  Q
    |||||||||||  | |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  39696064 gacaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 39695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 36577717 - 36577616
Alignment:
Q  273 agaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgt 372  Q
    ||||||||||  |||||||| |||| ||| ||||||||||||||||||       |||||| |||| |||||||||||| || |||||||| ||||||||    
T  36577717 agaaaatgatataatttagtataattatatgtgtcgtgtcggtgtcga-------caccgatgcgtatccgacacgggatacgcctaatccaagaagtgt 36577625  T
Q  373 ctgtgcttc 381  Q
    |||||||||    
T  36577624 ctgtgcttc 36577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 384
Target Start/End: Original strand, 6247689 - 6247728
Alignment:
Q  345 cacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6247689 cacgggacacacctaatccgagaagtgtctgtgcttcata 6247728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 7997171 - 7997108
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||||||||| ||||||||||||||| | ||||||||||||| |||||||||| ||||||||||    
T  7997171 tgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaagtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Complemental strand, 38464361 - 38464301
Alignment:
Q  338 tgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataagatatctccttt 397  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcataggttgtctccttt 38464301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 21576756 - 21576686
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  21576756 gtgtcgatgtcggacac-gacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcata 21576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 17123119 - 17123165
Alignment:
Q  338 tgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  17123119 tgtccgacacgggacacgcctaatccgaggagtgtccgtgcttcata 17123165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 26205789 - 26205695
Alignment:
Q  285 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||| |||||||||||||||||||||| |||||||      |||||| |||||| ||||||| |||||||||| |||||| | | ||||| |||||||||    
T  26205789 aattcagtgtaatcataggtgtcgtgttggtgtcg------gacaccaacgcgtatccgacaccgggacacacgtaatccaaaaggtgtccgtgcttcat 26205696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 2419921 - 2419985
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||| ||||||||||| | ||||||||||||||||||  |||||| ||||||||||    
T  2419921 tgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcata 2419985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 21137697 - 21137789
Alignment:
Q  263 taataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaat 361  Q
    ||||||| | |||||||||   |||| |||| |||||||||||||||||||||        |||||||| |||||||||||||| |||||||||||||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggt--------cggacaccaacgcgtgtccgacaccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 381
Target Start/End: Original strand, 30183624 - 30183675
Alignment:
Q  331 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttc 381  Q
    |||| |||||||||||| ||||||| |||||| |||||||||||||||||||    
T  30183624 cgacacgtgtccgacactgggacacgcctaattcgagaagtgtctgtgcttc 30183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 39695999 - 39695952
Alignment:
Q  337 gtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||||| |||||||| || |||||| ||||||||||    
T  39695999 gtgtccgacacgggacacgcctaatcctaggagtgtcggtgcttcata 39695952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 43564929 - 43564999
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| |||  ||||||||| | ||||||| |||||||||||||||||| ||||||||||    
T  43564929 gtgtcggtgtcggacac-gacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcata 43564999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 2548464 - 2548498
Alignment:
Q  350 gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||| |||||||||||||||||    
T  2548464 gacacacctaatccgaggagtgtctgtgcttcata 2548498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 14674333 - 14674367
Alignment:
Q  350 gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||| |||||||||||||||||    
T  14674333 gacacacctaatccgaggagtgtctgtgcttcata 14674367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 25863210 - 25863268
Alignment:
Q  261 tataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    ||||||||||| ||||||||||  |||| |||||||| ||| |||||||||| ||||||    
T  25863210 tataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcg 25863268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 36642755 - 36642696
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttc 381  Q
    |||||||||| ||| ||||||||||||||||||| ||||||  ||| |||||| |||||||    
T  36642755 tgtcggacac-gacacgtgtccgacacgggacacgcctaattggaggagtgtcggtgcttc 36642696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 255 - 384
Target Start/End: Complemental strand, 23354711 - 23354582
Alignment:
Q  255 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 354  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||||||  ||||| ||||||||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggggtcggacaccgaccggtgtctgacacgggacac 23354612  T
Q  355 acctaatccgagaagtgtctgtgcttcata 384  Q
     ||||||||||| |||||| ||| ||||||    
T  23354611 gcctaatccgaggagtgtccgtggttcata 23354582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 23355054 - 23354926
Alignment:
Q  255 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 354  Q
    |||||| |||||||||| ||||||||||  ||||||||| ||||||||||||| |||||||||||  || |||||||||| |||||| ||||||||||||    
T  23355054 gacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgacccgtgtctgacacgggacac 23354955  T
Q  355 acctaatccgagaagtgtctgtgcttcat 383  Q
     ||||||||||| ||||||  ||||||||    
T  23354954 gcctaatccgaggagtgtccttgcttcat 23354926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 384
Target Start/End: Original strand, 25544475 - 25544611
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg 348  Q
    ||||||||||| ||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||  |||| |||||| ||| |||||||||| |    
T  25544475 gacaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcagtgtcagacaccaacgtgtgtccgacatg 25544574  T
Q  349 g-gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |  ||||||||||||| | ||||||| ||| ||||||    
T  25544575 gatacacacctaatccaaaaagtgtccgtggttcata 25544611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 11308033 - 11307935
Alignment:
Q  285 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  || |||| ||||||||| |||||| ||||||||||    
T  11308033 aattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacac-cgaaacacttaatccgaggagtgtccgtgcttcata 11307935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 384
Target Start/End: Original strand, 38919201 - 38919335
Alignment:
Q  250 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgg 349  Q
    ||||||| ||| |||||||||| |||||||| |  | |||||||||||||||||||||||||  |||||| ||||||| || || ||||||||||||| |    
T  38919201 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgatgcgtgtccgacacag 38919300  T
Q  350 gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||  |||||| ||  ||||| |||||||||||    
T  38919301 gacacgtctaatctgaagagtgtttgtgcttcata 38919335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 24011043 - 24011099
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 318  Q
    |||||||||| |||||||||   |||||||||||||||||||||||| |||||||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtc 24011099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 37419802 - 37419872
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| || ||||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  37419802 gtgtcggtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 37419872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 18889584 - 18889520
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||| ||||||||| | |||||||||||| || || ||||||| |||||||||    
T  18889584 tgtcggacaccgacgcatgtccgacacccggacacacctaacccaagtagtgtctctgcttcata 18889520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 37411255 - 37411188
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttc 381  Q
    |||||||||||| |||| |||||||||||||||| ||||||| |||| |||||| |||| |||||||||    
T  37411255 gtgtcgatgtcgaacac-gacgcgtgtccgacactgggacacgcctagtccgaggagtgcctgtgcttc 37411188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 18841001 - 18840954
Alignment:
Q  338 tgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  18841001 tgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 18840954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 25072754 - 25072801
Alignment:
Q  337 gtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| || |||||||||||||||| || |||||||||||||||||||    
T  25072754 gtgtcggatacgggacacacctaatgcgtgaagtgtctgtgcttcata 25072801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 28596517 - 28596587
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| ||||||||||||  |||||| ||||||||||| |||||| ||||||||||    
T  28596517 gtgtcggtgtcggacac-gacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||||| |||||||||| ||| | |||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  2438730 gtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 18420398 - 18420364
Alignment:
Q  350 gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| |||||||||||||||||||||||||||||    
T  18420398 gacacgcctaatccgagaagtgtctgtgcttcata 18420364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 19573976 - 19574042
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||||  |||||||||||||||||| |   |||| |||||||| ||||||| |||||||||||||    
T  19573976 ccgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcg 19574042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 26769586 - 26769640
Alignment:
Q  331 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  26769586 cgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcata 26769640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 37986777 - 37986843
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||||| |||||||||| | ||||||||  | || ||||||||||||||| |||||| |||||||    
T  37986777 ccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 37986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 22085004 - 22085049
Alignment:
Q  255 gacacatataataatttaagaaaatgattaaatttagtgtaatcat 300  Q
    ||||| |||||||||||||||||||||   ||||||||||||||||    
T  22085004 gacacgtataataatttaagaaaatgacataatttagtgtaatcat 22085049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 30563416 - 30563501
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac 347  Q
    |||||||||| |||||||||   |||| | |||||  |||||||| |||||||||||  ||||||||||| | |||| ||||||||    
T  30563416 ataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcagtgtcggacacccaggcgtatccgacac 30563501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 44860401 - 44860450
Alignment:
Q  337 gtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcataa 385  Q
    |||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  44860401 gtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcataa 44860450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 384
Target Start/End: Complemental strand, 12601238 - 12601142
Alignment:
Q  289 tagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||| ||||||| ||| || |||||  ||||  |||||||||||||||| ||||   |||||||||||| |||| ||||||||| |||||||    
T  12601238 tagtataataataggtgccgtatcagtgtcagtgtcaaacaccgacgcgtgtccaacaccaagacacacctaattcgaggagtgtctgtacttcata 12601142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 17651617 - 17651685
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcataagat 388  Q
    |||||||||| |||||||||| ||||| | ||||| |||||||| | | ||||| ||||||||||||||    
T  17651617 tgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcataagat 17651685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 41849355 - 41849419
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||||||| |||| || ||||| |||||| | ||| ||||| ||||||||||    
T  41849355 tgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttcata 41849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 241 - 384
Target Start/End: Complemental strand, 13009566 - 13009423
Alignment:
Q  241 gaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgt 340  Q
    |||||||||||||||||||  |||||||||| ||||||  ||  ||||||||||||||||| ||||||||||||||| | |||| ||||||||||| |||    
T  13009566 gaagcacggacaccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgt 13009467  T
Q  341 ccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||| |||||||| || || ||| ||||||||||    
T  13009466 ccgacacgggacacgcctaatccaaggagcgtccgtgcttcata 13009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 384
Target Start/End: Original strand, 39820435 - 39820546
Alignment:
Q  261 tataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaa 360  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||| |||||    
T  39820435 tataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtc------------ggacaccgacgcgtgtccgacacgggacacgcctaa 39820522  T
Q  361 tccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||| ||||||||||    
T  39820523 tccgagaagtgtccgtgcttcata 39820546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 13845229 - 13845322
Alignment:
Q  250 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccg 343  Q
    ||||||||||| |||||||||| ||||||||||  ||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  13845229 acaccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacactgacgcgtgtccg 13845322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 383
Target Start/End: Original strand, 44067514 - 44067644
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 351  Q
    |||||||  |||||||||| |||||||||   |||  |||||||| ||| ||||||||||||||||| |||||||||| || |||||||||||| | |||    
T  44067514 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg-tgtcggacactgatgcgtgtccgacaccagga 44067612  T
Q  352 cacacctaatccgagaagtgtctgtgcttcat 383  Q
    ||| |||||| |||| |||||| |||||||||    
T  44067613 cacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 384
Target Start/End: Original strand, 40063941 - 40064080
Alignment:
Q  245 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 344  Q
    |||||||||||||||  |||||||||| |||||||||   |||| | |||||||||||| |||||||||||||| |   | | | |||||| ||||||||    
T  40063941 cacggacaccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtccaacac-gtcgccgacgtgtgtccga 40064039  T
Q  345 ca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    || ||||||||| |||||||||| |||||| ||||| ||||    
T  40064040 caccgggacacatctaatccgaggagtgtccgtgctacata 40064080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 29510304 - 29510234
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  29510304 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 29510234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 38487220 - 38487158
Alignment:
Q  323 tcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||||||    
T  38487220 tcggacaccgacgcgtgtccgacacccggacacacataatccgaggagtgtctgtgcttcata 38487158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 14513181 - 14513109
Alignment:
Q  313 ggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||| |||| ||||||||||| ||||||||| ||| ||||||||||||| |||| |||||||| ||||||    
T  14513181 ggtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatccaagaattgtctgtgattcata 14513109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 36450758 - 36450695
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| ||||||||||||||||  |||||| ||||||||||| |||||||||||||||||    
T  36450758 tgtcggacac-gacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcata 36450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 2035729 - 2035868
Alignment:
Q  245 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 344  Q
    |||| ||||||||||  |||| |||||| |||||| |    ||| |||||||| ||||||||||| || ||| || ||||  | ||||||||||||||||    
T  2035729 cacgaacaccgacaccgataacaatttaggaaaataacattattcagtgtaattataggtgtcgtatc-gtgccggtgtc--agaccgacgcgtgtccga 2035825  T
Q  345 ca-cgggacacacctaatccgagaagtgtctgtgcttcataag 386  Q
    || ||||| |||||||||||||| || ||| ||||||||||||    
T  2035826 caccgggagacacctaatccgagtagcgtccgtgcttcataag 2035868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Complemental strand, 12559103 - 12559044
Alignment:
Q  323 tcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttc 381  Q
    |||||||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||||    
T  12559103 tcggacaccgacacgtgtccgacaacgggacacatctaatcccaggagtgtctgtgcttc 12559044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 30068032 - 30067969
Alignment:
Q  322 gtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||||  |||||| ||||||||||    
T  30068032 gtcggataccgacgtgtgtccgacactgggacacacctaatccgatgagtgtccgtgcttcata 30067969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 15816158 - 15816059
Alignment:
Q  285 aatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 382  Q
    ||||||||||||| ||| |||||| ||||| ||| | |||||||||| ||| ||  |||||||| ||||||| |||||||||||||||||| ||||||||    
T  15816158 aatttagtgtaattataagtgtcggtgtcg-tgttggtgtcggacac-gacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 15816061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 16641947 - 16641910
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16641947 cgggacacacctaatccgaggagtgtctgtgcttcata 16641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 33389372 - 33389296
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| ||||||| ||||| |||||||  |||||||||||| |||| ||||||||||| ||||||||| ||||||||||    
T  33389372 gtgttggtgtcg-tgtcgaacaccgatacgtgtccgacactgggatacacctaatccaagaagtgtcggtgcttcata 33389296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 3911140 - 3911240
Alignment:
Q  285 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||| |||| ||||||| ||||||||| ||||||| | |||||||||||||| ||||||| ||   ||||| |||||||  | |||||| ||||||||||    
T  3911140 aattcagtgaaatcataagtgtcgtgttggtgtcggtatcggacaccgacgcatgtccgatactcagacactcctaatctaaaaagtgtatgtgcttcat 3911239  T
Q  384 a 384  Q
    |    
T  3911240 a 3911240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 35431192 - 35431140
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 314  Q
    |||||||||| |||||||||   | ||||||||||||||||||||||||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 8343391 - 8343445
Alignment:
Q  331 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  8343391 cgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 16869765 - 16869699
Alignment:
Q  264 aataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacac 330  Q
    ||||||||||||||||||   |||| | | ||||||| |||||||||| ||||||| ||||||||||    
T  16869765 aataatttaagaaaatgacataattcactataatcattggtgtcgtgttggtgtcggtgtcggacac 16869699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 25566911 - 25566948
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  25566911 cgggacacgcctaatccgaggagtgtctgtgcttcata 25566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 1676719 - 1676771
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 314  Q
    ||||||||||  ||||||||   | ||||||||||||||||||||||||||||    
T  1676719 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 8343037 - 8343085
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcata 8343085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 24413563 - 24413500
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| || |||||||| ||| ||||||||  ||||||||||||||||| ||||||||||    
T  24413563 tgtcggacac-gatgcgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcata 24413500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 249 - 384
Target Start/End: Complemental strand, 3144717 - 3144588
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg 348  Q
    |||||| ||||  |||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||       |||||| |||||||||| |||||    
T  3144717 gacacctacacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtca------gacaccaacgcgtgtccaacacg 3144624  T
Q  349 ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
     |||||||||||||||||||||||| ||||||||||    
T  3144623 agacacacctaatccgagaagtgtccgtgcttcata 3144588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 381
Target Start/End: Complemental strand, 20743339 - 20743210
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 351  Q
    |||||||  |||||||||| |||||||||   |||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||| |    
T  20743339 ccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgacaccggaa 20743240  T
Q  352 cacacctaatccgagaagtgtctgtgcttc 381  Q
    |||| |||||||||  |||||| |||||||    
T  20743239 cacatctaatccgatgagtgtccgtgcttc 20743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 384
Target Start/End: Original strand, 17876166 - 17876284
Alignment:
Q  266 taatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccg 364  Q
    |||||| |||||||||   ||||||||||||||||| ||| |||||| |||||| |||| ||||||||||| ||||||||||  |||||||||||||||     
T  17876166 taattttagaaaatgacataatttagtgtaatcatatgtgccgtgtcagtgtcg-tgtcagacaccgacgcttgtccgacaccaggacacacctaatcca 17876264  T
Q  365 agaagtgtctgtgcttcata 384  Q
    || |||||||||||||||||    
T  17876265 aggagtgtctgtgcttcata 17876284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 254 - 384
Target Start/End: Complemental strand, 31243608 - 31243477
Alignment:
Q  254 cgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggac 352  Q
    |||||| ||||||||||| |||||||||   |||| |||||||||||||||||| ||||||||| | ||||||||||||| |||||| ||||| | ||||    
T  31243608 cgacacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggac 31243509  T
Q  353 acacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||  ||| ||||| |||| ||||||    
T  31243508 acacctaatatgaggagtgtttgtggttcata 31243477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 373
Target Start/End: Original strand, 6273944 - 6274062
Alignment:
Q  255 gacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacac 354  Q
    |||||| | |||||||| ||||||||||  ||||||||||||| ||||  ||||||||||||||| |||| |||| |||||| ||||||||||  |||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccgacacaagacac 6274043  T
Q  355 acctaatccgagaagtgtc 373  Q
     ||||||  ||||||||||    
T  6274044 gcctaatatgagaagtgtc 6274062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 53381653 - 53381531
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggga 351  Q
    |||||||  ||||||||||||||||||||    ||| |||||||| ||||| |||||||||||||||      ||||| ||||||| |||||||| ||||    
T  53381653 ccgacaccgataataatttaagaaaatga----attcagtgtaattataggcgtcgtgtcggtgtcg------gacactgacgcgtatccgacaccggga 53381564  T
Q  352 cacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||| |||||| ||||||||||    
T  53381563 cacacctaatccgaggagtgtccgtgcttcata 53381531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 944697 - 944603
Alignment:
Q  285 aatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    ||||||||||||| |||||||||||||| |||||||      |||| |||||||||||||||| ||||||||||||||| ||| ||| |||| |||||||    
T  944697 aatttagtgtaattataggtgtcgtgtcagtgtcga------acacagacgcgtgtccgacaccgggacacacctaatctgaggagtctctgagcttcat 944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 7012064 - 7012196
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 350  Q
    |||||||  |||||||||| |||||||||   |||| ||||| ||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||| ||||    
T  7012064 ccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttg-tgtcggtgtcggacaccgacgcgtatccgacaccggg 7012162  T
Q  351 acacacctaatccgagaagtgtctgtgcttcata 384  Q
      ||||||||| |||| |||||| ||||||||||    
T  7012163 gaacacctaatgcgaggagtgtccgtgcttcata 7012196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 24343505 - 24343631
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 351  Q
    |||||||  |||||||||| ||||||| |   |||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||| |||||    
T  24343505 ccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtcc------gacaccgacgcgtgtccgacaccggga 24343598  T
Q  352 cacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||| |||| || ||| |||||| ||||||||||    
T  24343599 cacgcctattctgaggagtgtccgtgcttcata 24343631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 3947777 - 3947696
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcataagatat 390  Q
    ||||| |||||| |||||||||| ||| ||||||||||||  |||||||||||||||||| |||||| ||||||||||| ||||    
T  3947777 gtgtcagtgtcg-tgtcggacac-gacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcataatatat 3947696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 23292997 - 23292927
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  23292997 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 23292927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 373
Target Start/End: Original strand, 32910548 - 32910670
Alignment:
Q  252 accgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 350  Q
    ||||||||  |||||||||| |||||||||   |||| |||||||| || |||||  ||||||| ||| | | |||||| ||||||||||||||| |  |    
T  32910548 accgacacggataataatttgagaaaatgacataattcagtgtaattatgggtgttatgtcggtatcggtattggacactgacgcgtgtccgacaccatg 32910647  T
Q  351 acacacctaatccgagaagtgtc 373  Q
    |||| ||||||||||| ||||||    
T  32910648 acacgcctaatccgaggagtgtc 32910670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 18513240 - 18513176
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||| |||||||||| | |||||| ||||||| ||| |||||| ||||||||||    
T  18513240 tgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcata 18513176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 23386166 - 23386210
Alignment:
Q  275 aaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcg 23386210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 35161092 - 35161154
Alignment:
Q  322 gtcggacaccgacgcgtgtccgacacggga-cacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||| ||| |||||||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  35161092 gtcggacac-gacacgtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcata 35161154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 19482743 - 19482797
Alignment:
Q  331 cgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  19482743 cgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 19482797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 40784034 - 40784076
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcataagata 389  Q
    |||||||||||||||||||| |||||| |||||||||| ||||    
T  40784034 cgggacacacctaatccgaggagtgtccgtgcttcataggata 40784076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 10133749 - 10133805
Alignment:
Q  307 cgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatc 362  Q
    ||||| ||||||| |||| ||||| ||||||||||||||| | ||||||||||||||    
T  10133749 cgtgttggtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatc 10133805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 39507171 - 39507127
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgt 306  Q
    ||||||||||| |||||||||  |||| |||||||||||||||||    
T  39507171 ataataatttatgaaaatgatataattaagtgtaatcataggtgt 39507127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  264 aataatttaagaaaatgattaaatttagtgtaatcataggt 304  Q
    |||||||| ||||||||||  ||||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 245 - 384
Target Start/End: Complemental strand, 29812733 - 29812599
Alignment:
Q  245 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccga 344  Q
    ||||||||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||   | |||      ||||    
T  29812733 cacggacaccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggtgtcggtgtcggac-----accga 29812639  T
Q  345 cacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  29812638 cacgggacacgcctaatccgagaagtgtccgtgcttcata 29812599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 23751907 - 23752017
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 361  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||||||||            ||||||||||||||||| |||||||||||| ||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtc------------ggacaccgacgcgtgtcagacacgggacacgcctaat 23751994  T
Q  362 ccgagaagtgtctgtgcttcata 384  Q
    |||| ||||||||||||||||||    
T  23751995 ccgataagtgtctgtgcttcata 23752017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 384
Target Start/End: Complemental strand, 7133342 - 7133213
Alignment:
Q  250 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-g 348  Q
    ||||||||||| || ||||||| |||||||||   |||| ||||||||||||||||  ||||||||||||      |||||||||||||||||||||| |    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcg------gacaccgacgcgtgtccgacactg 7133249  T
Q  349 ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||| ||| || ||| ||||||||||    
T  7133248 ggacacacctaatctgaggagcgtccgtgcttcata 7133213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 380
Target Start/End: Original strand, 43249991 - 43250118
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggga 351  Q
    |||||||  |||||||||| |||||||||   |||  |||||||| ||| |||||||||||||||||  ||||||||| ||||||||||||||| | |||    
T  43249991 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg-cgtcggacactgacgcgtgtccgacaccagga 43250089  T
Q  352 cacacctaatccgagaagtgtctgtgctt 380  Q
    ||| |||||| |||| |||||| ||||||    
T  43250090 cacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 4017855 - 4017730
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 352  Q
    |||||||  |||||||||| |||||| |||  ||||||||||||||||| ||||||||| ||      ||||||||||||||| ||||| ||||||| ||    
T  4017855 ccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttgg------tgtcggacaccgacgtgtgtctgacacggaac 4017762  T
Q  353 acacctaatccgagaagtgtctgtgcttcata 384  Q
    || |||||||  | ||||||  ||||||||||    
T  4017761 acgcctaatctaaaaagtgttcgtgcttcata 4017730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 5409847 - 5409772
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  5409847 gtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 5409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 38804616 - 38804490
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggga 351  Q
    |||||||  |||||||||| |||||||||   |||  || ||||||||||||||||||| |||||||      |||||||||| ||||||||| | ||||    
T  38804616 ccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcg------gacaccgacgtgtgtccgacgccggga 38804523  T
Q  352 cacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||  ||||||||||| ||||| |||||||||||    
T  38804522 catgcctaatccgaggagtgtatgtgcttcata 38804490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 598256 - 598326
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||| ||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  598256 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcata 598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 21864856 - 21864926
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| |||||||||||| |||||||  ||||| |||| |||||||||||||||||    
T  21864856 gtgtcgctgtcggacac-gacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcata 21864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 21880200 - 21880270
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| | ||||||||||  |||||| |||||||||||||||||| ||||||||||    
T  21880200 gtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcata 21880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 17780136 - 17780078
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcga 320  Q
    ||||||||||||||||||||   ||||   |||||| ||||||||||||||||||||||    
T  17780136 ataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtcga 17780078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 32094030 - 32093955
Alignment:
Q  309 tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac--gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||| |||||||||| ||| ||||||||||||  ||||||| ||||||||||| |||||  ||||||||||    
T  32094030 tgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcata 32093955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 12278889 - 12278942
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtc 373  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||| || ||||||    
T  12278889 tgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtgtc 12278942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 22683820 - 22683720
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtc--gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca 346  Q
    |||||||| ||  |||||||||| |||| |||||  |||| |||| |||||||||||||  ||||| |||||  ||||||||| ||||| ||||| ||||    
T  22683820 gacaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgtgtcagtgtcagtgtcggacatcgacgggtgtctgaca 22683721  T
Q  347 c 347  Q
    |    
T  22683720 c 22683720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 23930230 - 23930283
Alignment:
Q  266 taatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||| |||||||||   |||| ||||||||||||||||| ||||||||||||    
T  23930230 taatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcg 23930283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 40131989 - 40131940
Alignment:
Q  336 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| |||||||  |||||||||| |||||||||||||||||    
T  40131989 cgtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcata 40131940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 41229307 - 41229238
Alignment:
Q  316 gtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| ||||||||||| ||||||||||| ||| | ||||| ||||||  |||||||||| ||||||||||    
T  41229307 gtcggtgtcggacaccaacgcgtgtccgtcactgcgacacgcctaatatgagaagtgtccgtgcttcata 41229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 49107887 - 49107924
Alignment:
Q  348 gggacacacctaatccgagaagtgtctgtgcttcataa 385  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  49107887 gggacatacctaatccgaggagtgtctgtgcttcataa 49107924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 12278842 - 12278894
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 314  Q
    ||||||||||||||||||||   |||| |||||||| ||| ||||||||||||    
T  12278842 ataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgg 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 32855361 - 32855405
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgt 306  Q
    |||||||||||||||||||||| |||| | |||||||||| ||||    
T  32855361 ataataatttaagaaaatgatttaattgaatgtaatcatatgtgt 32855405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 52369782 - 52369905
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaa 360  Q
    |||||||||| ||||||| |   |||| | |||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||     
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggacacacctat 52369881  T
Q  361 tccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||| ||||||||||    
T  52369882 tccgaggagtgtccgtgcttcata 52369905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 236 - 384
Target Start/End: Original strand, 25074768 - 25074913
Alignment:
Q  236 cctatgaagcacggacac--cgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccga 333  Q
    ||||||||||||||||||  ||||||  |||||||||| |||||||||   |||| |||||||||||||| || |||||||||||       |||||| |    
T  25074768 cctatgaagcacggacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtct------gacaccaa 25074861  T
Q  334 cgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||| ||||||||||||||||||| |||||  ||||||||||    
T  25074862 cgcgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcata 25074913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 14223914 - 14223793
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 352  Q
    |||||||| |||||||||| |||||| |||  ||||||||||| ||||| ||||||||||||      |||| ||||||||| ||||||||||| |||||    
T  14223914 ccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg------tgtccgacaccgacacgtgtccgacatgggac 14223821  T
Q  353 acacctaatccgagaagtgtctgtgctt 380  Q
    || ||||||| ||| ||| |||||||||    
T  14223820 acgcctaatctgaggagtttctgtgctt 14223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 25892458 - 25892524
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||| ||| |||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||    
T  25892458 ccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcg 25892524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 384
Target Start/End: Original strand, 27903633 - 27903756
Alignment:
Q  256 acacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacggga-cac 354  Q
    ||||| |||||||||| |||||| |||  |||||| |||||||||| |||| ||||||||||||      || ||||||||||||| ||||| ||| ||     
T  27903633 acacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcg------gataccgacgcgtgtctgacactggatcat 27903726  T
Q  355 acctaatccgagaagtgtctgtgcttcata 384  Q
     |||||||||||||||||| ||||||||||    
T  27903727 gcctaatccgagaagtgtccgtgcttcata 27903756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 8903430 - 8903553
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 352  Q
    |||||||  |||||| ||| |||||||||  | |||||||||||| |||||||||||||||      ||| |||||||| | ||||||||||| ||||||    
T  8903430 ccgacacggataatattttgagaaaatgac-atatttagtgtaattataggtgtcgtgtcg------atgccggacacctatgcgtgtccgac-cgggac 8903521  T
Q  353 acacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||| |||||  ||||||||||    
T  8903522 acacctaatccgaggagtgttcgtgcttcata 8903553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 21211353 - 21211412
Alignment:
Q  326 gacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  21211353 gacaccgacgcgtgtccgacactgggacactcctaatccgaggagtgtttgtgcttcata 21211412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 15864831 - 15864950
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggac 352  Q
    |||||||  |||||||||| | ||||||||  ||||||||||||||||||||||||            |||||||||||||| |||||| ||||||||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcg------------tgtcggacaccgacacgtgtctgacacgggac 15864918  T
Q  353 acacctaatccgagaagtgtctgtgcttcata 384  Q
    || |||||||| |  |||||| ||||||||||    
T  15864919 acgcctaatccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 34189409 - 34189483
Alignment:
Q  237 ctatgaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgt 311  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||   | || ||||||||| ||||||||||||    
T  34189409 ctatgaagcacggacatcgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 14216958 - 14217021
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  14216958 tgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 14223087 - 14223150
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  14223087 tgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 41961650 - 41961580
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| | |||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  41961650 gtgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 41961580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 21149116 - 21149186
Alignment:
Q  315 tgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcataa 385  Q
    ||||| ||||||||||| ||| ||||| ||||| | |||||||||||||||| | |||||||| |||||||    
T  21149116 tgtcgttgtcggacaccaacgtgtgtctgacaccgaacacacctaatccgaggaatgtctgtgtttcataa 21149186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 25326421 - 25326512
Alignment:
Q  250 acaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac 347  Q
    ||||| ||||| |||||||||||| ||||| ||  ||||||||||||| |||| |||||||| ||      |||||||||||||||||||| ||||||    
T  25326421 acaccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttgg------tgtcggacaccgacgcgtgttcgacac 25326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 21367349 - 21367382
Alignment:
Q  349 ggacacacctaatccgagaagtgtctgtgcttca 382  Q
    ||||||||||||||||||||||||||||||||||    
T  21367349 ggacacacctaatccgagaagtgtctgtgcttca 21367382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 49651754 - 49651717
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49651754 cgggacacacctaatccgagaagtgtccgtgcttcata 49651717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 1830341 - 1830397
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgt 309  Q
    ||||||| | |||||||||||||||||||   |||| ||||||||||||||||||||    
T  1830341 ccgacacttttaataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 14209172 - 14209242
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  14209172 gtgtcggtgtcggacac-gacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcata 14209242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 24205046 - 24204983
Alignment:
Q  321 tgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||||||||| ||||||||||||||| | |||||| |||||| |||| |||||| |||||||||    
T  24205046 tgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 55401123 - 55401193
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| |||||||||||| | ||||| ||||||||||| |||||| ||||||||||    
T  55401123 gtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcata 55401193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 3730221 - 3730167
Alignment:
Q  258 acatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtc 312  Q
    |||||||||||||| ||| |||||   |||| |||||||||||||||||||||||    
T  3730221 acatataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 37077418 - 37077488
Alignment:
Q  315 tgtcgatgtcggacaccgacgcgtgtccgacacggg-acacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| ||||| |||| ||||| ||||||||||||| ||||||||||||| || | |||| ||||||||||    
T  37077418 tgtcggtgtcgtacacggacgcatgtccgacacggggacacacctaatccaaggaatgtccgtgcttcata 37077488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 12704709 - 12704652
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||||||| | |||||||   |||| | ||||||||||||||||||||||||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcg 12704652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 17276796 - 17276845
Alignment:
Q  336 cgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  17276796 cgtgtccgacaccgagacgcacctaatccgagaagtgtccgtgcttcata 17276845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 27505294 - 27505369
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| |||| ||||| ||| |||||||||||| ||||||  ||||||||||| |||||| ||||||||||    
T  27505294 gtgtcggtgtcg-tgtctgacac-gacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcata 27505369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 27277829 - 27277781
Alignment:
Q  336 cgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||||   |||||||||| ||||| |||||||||||    
T  27277829 cgtgtccgacacgggacatgtctaatccgaggagtgtatgtgcttcata 27277781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 34185101 - 34185053
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||| ||||||| ||||||||||| |||||| ||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcata 34185053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 34446572 - 34446689
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaa 360  Q
    |||||||||| |||||||||   |||| ||||||||||||||||||||||||||||| |      |||||||||||| || ||||| |||||||||||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcca------acaccgacgcgtatctgacactgggacacacctaa 34446665  T
Q  361 tccgagaagtgtctgtgcttcata 384  Q
    ||| || |||||| ||||||||||    
T  34446666 tccaaggagtgtccgtgcttcata 34446689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 6389741 - 6389805
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgt 317  Q
    |||||||  |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  6389741 ccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 17168515 - 17168458
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  17168515 ataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcg 17168458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 2153937 - 2153838
Alignment:
Q  264 aataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatcc 363  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| || ||||| |||||| |||| | |  | | |||||||| |||||| ||||||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgtcgcgttggtgttgatgtcagacagcaatacatatccgacacaggacacgcctaatcc 2153838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 26247433 - 26247549
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 361  Q
    ||||||||||||||||||||   | |||||| ||||||||||| |||||||||      ||||||||||| || |||||| ||||| | |||||||||||    
T  26247433 ataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcgg------tgtcggacaccaacacgtgtctgacaccgaacacacctaat 26247526  T
Q  362 ccgagaagtgtctgtgcttcata 384  Q
    | ||| |||||| ||| ||||||    
T  26247527 ctgaggagtgtccgtgtttcata 26247549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 6389806 - 6389850
Alignment:
Q  340 tccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  6389806 tccgacacgggacactcctaatccgagaagtgtccgtgcttcata 6389850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 384
Target Start/End: Complemental strand, 34895111 - 34894969
Alignment:
Q  237 ctatgaagcacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgc 336  Q
    ||||||| |||||||||  |||| ||||||||||| ||||||| ||  |||| ||||||||||||||     |||| ||||| |||||||| ||  | ||    
T  34895111 ctatgaaacacggacacaaacacctataataatttgagaaaattatacaattcagtgtaatcatagg-----tgtcagtgtc-atgtcggaaactaatgc 34895018  T
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
     |||||||||| ||||||||||||||  ||| |||||| ||||||||||    
T  34895017 ttgtccgacacagggacacacctaatatgaggagtgtccgtgcttcata 34894969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 34595182 - 34595252
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| |||||| ||||| ||||||||||||||||||| |||||| ||||||||||    
T  34595182 gtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcata 34595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 4877991 - 4878060
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| | |||||||||| |||||| ||||||||||| |||||| ||||||||||    
T  4877991 gtgtcggtgtcggacac-gacacatgtccgacacaggacacgcctaatccgaggagtgtccgtgcttcata 4878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 19602233 - 19602171
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtc 324  Q
    |||||||||| ||||||||||  |||| ||||||||||||||| | ||||||||||| |||||    
T  19602233 ataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtccatgtc 19602171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 9107431 - 9107300
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-ggg 350  Q
    ||||||||  ||||||||| | ||||| |  ||||| |||||||| | | |||||| ||||| ||||| ||||||||||  ||| ||||||||||| |||    
T  9107431 ccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcg-tgtcggtgtcggacaca-acgtgtgtccgacaccggg 9107334  T
Q  351 acacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||||||| |||| | ||||||||||    
T  9107333 acacacctaatccgaggagtgcccgtgcttcata 9107300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Original strand, 31959220 - 31959269
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataa 385  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataa 31959269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 32839609 - 32839572
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||| |||||||||||||||||||||||||||||    
T  32839609 cgggacacgcctaatccgagaagtgtctgtgcttcata 32839572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 1191711 - 1191644
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||| |||||| ||||||||||||||||   |||||||||||||||| |  ||||||||||||||    
T  1191711 gtgtcgatgttggacac-gacgcgtgtccgacacc--acacacctaatccgaggaccgtctgtgcttcata 1191644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 9025495 - 9025448
Alignment:
Q  336 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 382  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  9025495 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 382  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 8776963 - 8776909
Alignment:
Q  331 cgacgcgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| |||||||||||| | ||||||||||||||||| |||||| ||||||||||    
T  8776963 cgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcata 8776909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 27903999 - 27903961
Alignment:
Q  348 gggacacacctaatccgagaagtgtctgtgcttcataag 386  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  27903999 gggacacacctaatccgaggagtgtctgtgattcataag 27903961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 13689258 - 13689193
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 314  Q
    |||||||||||| |||||||||| ||||||| |  || || | ||||||||||||| |||||||||    
T  13689258 gacaccgacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtcgg 13689193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 17327666 - 17327591
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| |||||| |||||||||| ||| |||||| ||||| ||||||| ||||||||||| |||||| ||||||||||    
T  17327666 gtgtcagtgtcg-tgtcggacac-gacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcata 17327591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 30781363 - 30781290
Alignment:
Q  245 cacggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtc 318  Q
    |||| |||| ||||| | ||||||||| |||||||||   |||| | |||||||||||||||| ||||||||||    
T  30781363 cacgaacactgacacgtgtaataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgtc 30781290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 4388150 - 4388198
Alignment:
Q  337 gtgtccgacacg-ggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| |||||| |||||| ||| |||||||||||||||||||||||||    
T  4388150 gtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcata 4388198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 12696372 - 12696446
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    ||||| |||||| |||||||||| ||| |||||| ||||| ||||||||||| |||| || ||||||||||||||||    
T  12696372 gtgtcagtgtcg-tgtcggacac-gacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 473 - 402
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataa 385  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  473 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataa 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 384
Target Start/End: Complemental strand, 42004999 - 42004883
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcgatgtcggacaccgacgcgtgtccgacacgggacacacctaat 361  Q
    |||||||||| |||||||||   |||||||||||||||||||||| ||||||||      ||||||||||||||| ||||||||||   |||| ||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggt------gtcggacaccgacgcatgtccgacactaaacacgcctaat 42004906  T
Q  362 ccgagaagtgtctgtgcttcata 384  Q
     |||  |||||| ||||||||||    
T  42004905 tcgaagagtgtccgtgcttcata 42004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 1486720 - 1486646
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||||||||||| |||||||||| ||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  1486720 gtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 39101247 - 39101179
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgt 317  Q
    ||||||||||||||||||||||| ||||||| |   |||| |||||||| ||||||||||| |||||||    
T  39101247 gacaccgacacatataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcggtgt 39101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 6573981 - 6574047
Alignment:
Q  247 cggacaccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcg 313  Q
    |||||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||| ||||||    
T  6573981 cggacaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 20157361 - 20157285
Alignment:
Q  308 gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| |||| ||||||||||||||||||||| || ||||||||||||  ||| ||| || ||||||||||    
T  20157361 gtgtcggtgtcg-tgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgaggagtatccgtgcttcata 20157285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 34741916 - 34741964
Alignment:
Q  336 cgtgtccgacacgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  34741916 cgtgtccgacacgggacacgcctaatccgaagagtgtccgtgcttcata 34741964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 18190119 - 18190049
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||| |||||  || |||||||||||| ||||||||||||||||||| ||||| || ||||||||    
T  18190119 gtgtcgatgtcagacaca-acacgtgtccgacaccgggacacacctaatccgaggagtgtatgcgcttcata 18190049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 18556441 - 18556386
Alignment:
Q  330 ccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| ||| |||||||| ||||||| |||||||||||||||||| ||||||||||    
T  18556441 ccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcata 18556386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 23440004 - 23440051
Alignment:
Q  249 gacaccgacacatataataatttaagaaaatgattaaatttagtgtaa 296  Q
    ||||||||||| ||||||||||| ||||||||||  ||||||||||||    
T  23440004 gacaccgacacgtataataatttgagaaaatgatataatttagtgtaa 23440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 32899938 - 32900009
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||||||||| |||| |||| |||||||| ||||||||||| | ||||  |||||||||    
T  32899938 gtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgaggattgtccttgcttcata 32900009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 37598879 - 37598949
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||| |||||||||| ||| |||||||||||  ||||||| ||||||||||| |||||| ||||||||||    
T  37598879 gtgtcggtgtcggacac-gacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcata 37598949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  314 gtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcat 383  Q
    |||||| |||||||||  |||| ||||||||||| ||||||| ||||||||||| |||||| |||||||||    
T  42359460 gtgtcggtgtcggacaa-gacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 6936452 - 6936395
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcggtgtcg 319  Q
    |||||||| | |||||||||   |||| ||||||||||||||||||||||| ||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcg 6936395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 19562605 - 19562557
Alignment:
Q  336 cgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  19562605 cgtgtccgacacagggacacacctaatccgaggagtgtc-gtgcttcata 19562557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 23219653 - 23219608
Alignment:
Q  336 cgtgtccgacacgg-gacacacctaatccgagaagtgtctgtgctt 380  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||    
T  23219653 cgtgtccgacaccgtgacacacctaatccgagaagtgtttgtgctt 23219608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 23705454 - 23705417
Alignment:
Q  351 acacacctaatccgagaagtgtctgtgcttcataagat 388  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  23705454 acacacctaatccgagaagtgtatgtgcttcattagat 23705417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 42325640 - 42325677
Alignment:
Q  347 cgggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  42325640 cgggacacacctaattcgaggagtgtctgtgcttcata 42325677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 47989496 - 47989626
Alignment:
Q  253 ccgacacatataataatttaagaaaatgattaaatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cggg 350  Q
    |||||||| |||||||||||| ||||| |   |||| |||||||| | | |||||| ||||| ||||| |||||||||| ||| | |||| |||| ||||    
T  47989496 ccgacaca-ataataatttaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg-tgtcggtgtcggacac-gacacatgtctgacatcggg 47989592  T
Q  351 acacacctaatccgagaagtgtctgtgcttcata 384  Q
    |||| ||||||||||| |||||| ||||||||||    
T  47989593 acacgcctaatccgaggagtgtccgtgcttcata 47989626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 241624 - 241723
Alignment:
Q  285 aatttagtgtaatcataggtgtcg-tgtcggtgtcgatgtcggacaccgacgcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttca 382  Q
    ||||||||||||| ||  |||||| ||||| ||| | |||||||||| ||| |||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  241624 aatttagtgtaattatgagtgtcggtgtcg-tgttggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 236965 - 236915
Alignment:
Q  335 gcgtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||||||||||    
T  236965 gcgtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcata 236915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 56932 - 57052
Alignment:
Q  265 ataatttaagaaaatgattaaatttagtgtaatcataggtgtc-gtgtcggtgtcgatgtcggacaccgacgcgtgtccgaca-cgggacacacctaatc 362  Q
    ||||||| ||||||||||  |||| |||||||||||| ||||| ||||| |||||| || |||| ||| | ||||||| |||| ||| | ||||||||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtcagtgtc-gtgtcggtgacggagaccaatgcgtgtctgacaccggaaaacacctaatc 57030  T
Q  363 cgagaagtgtctgtgcttcata 384  Q
     ||| ||||| |||||||||||    
T  57031 tgaggagtgtttgtgcttcata 57052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 21372 - 21406
Alignment:
Q  350 gacacacctaatccgagaagtgtctgtgcttcata 384  Q
    ||||| |||||||||||||||||||||||||||||    
T  21372 gacacgcctaatccgagaagtgtctgtgcttcata 21406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 32774 - 32824
Alignment:
Q  337 gtgtccgacac-gggacacacctaatccgagaagtgtctgtgcttcataag 386  Q
    ||||||||||| ||||||||| ||||||||| |||||| ||||||||||||    
T  32774 gtgtccgacaccgggacacacataatccgaggagtgtcggtgcttcataag 32824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 1956 - 2008
Alignment:
Q  262 ataataatttaagaaaatgattaaatttagtgtaatcataggtgtcgtgtcgg 314  Q
    ||||||||||  ||||||||   | ||||||||||||||||||||||||||||    
T  1956 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University