View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_31 (Length: 392)
Name: NF1270_low_31
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 49691061 - 49690708
Alignment:
| Q |
9 |
atcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttc |
108 |
Q |
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| T |
49691061 |
atcatagggatgacaagaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttc |
49690962 |
T |
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| Q |
109 |
atnnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattgggg |
208 |
Q |
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| T |
49690961 |
ataaaaaaa-gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattgggg |
49690863 |
T |
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| Q |
209 |
tcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcag |
308 |
Q |
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| T |
49690862 |
tcaataatggaaatagtgttgccaatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcatagcag |
49690763 |
T |
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| Q |
309 |
ttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattc |
363 |
Q |
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| T |
49690762 |
ttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattc |
49690708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 49679427 - 49679073
Alignment:
| Q |
9 |
atcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttc |
108 |
Q |
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| T |
49679427 |
atcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagtttttc |
49679328 |
T |
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| Q |
109 |
atnnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattgggg |
208 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49679327 |
ataaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattgggg |
49679228 |
T |
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| Q |
209 |
tcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcag |
308 |
Q |
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| T |
49679227 |
tcaataatggaaatagtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcatagcag |
49679128 |
T |
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| Q |
309 |
ttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattc |
363 |
Q |
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| T |
49679127 |
ttttgttgagattatcacaaccttgaattgccaatgtaccacagcttgggaattc |
49679073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 49686792 - 49686448
Alignment:
| Q |
9 |
atcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttc |
108 |
Q |
| |
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||||||| || |||| | ||||||| ||||||||||| |||| || | | || |||||||| |||||||| ||||||||||||||||||||| || |||| |
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| T |
49686792 |
atcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttc |
49686693 |
T |
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| Q |
109 |
atnnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattgggg |
208 |
Q |
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|| |||||||||||||||| ||||||||| || |||| ||| ||| || ||||| ||||||||||||| |||||||||||||| ||| | |
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| T |
49686692 |
atataaaaa-gttccaaaaggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcaga |
49686597 |
T |
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| Q |
209 |
tcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcag |
308 |
Q |
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|||| ||||||||||| |||| | || | ||| | ||| ||| ||||||| ||| ||||||| | |||| | |||||||| | ||| |||||| |
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| T |
49686596 |
tcaacaatggaaatagtgttg------ggccgctcatttttaatgtttgtaacttgaaagtgttttcctcctttggtaaactggacgtgtttcgtagcag |
49686503 |
T |
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| Q |
309 |
ttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattc |
363 |
Q |
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| T |
49686502 |
ttttgttgagatcgtcacaaccttgaattgccaatgcaccacagtttgggaattc |
49686448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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