View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_34 (Length: 367)
Name: NF1270_low_34
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 2683868 - 2683533
Alignment:
| Q |
1 |
taatctcaatagttgaaattaataacgatattttt-gaaagggaaattaataa-caatttattagtagtataacgtttttggtggggtttatcaatttcc |
98 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683868 |
taatctcaatagatgaaattaataacgatattttttgaaagggaaattaataaacaatttattagtagtataacgtttttggtggggtttatcaatttcc |
2683769 |
T |
|
| Q |
99 |
tataagaccagcaaacannnnnnnnnncctatttgagtctacgcccaccgggacaacaagcaccactttgatcatgtcattcctttccactctcagaaat |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683768 |
tataagaccagcaaacattttttttt-cctatttgagtctacgcccaccgggacaacaagcaccactttgatcatgtcattcctttccactctcagaaat |
2683670 |
T |
|
| Q |
199 |
tccacctcacacttcttccaccatttctcaatccaacgcctccaaatccttcacacttcttcttcgccgtcgctactcaacgctcgcaacggtcttttcg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2683669 |
tccacctcacacttcttccaccatttctcaatccaacgcctccaaatccttcacacttcttcttcgccgtcgctactcaacgctcgcaacggtcttttcg |
2683570 |
T |
|
| Q |
299 |
ccgccattatcgccggcaccagtctagggtatgttct |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2683569 |
ccgccattatcgccggcaccagtctagggtatgttct |
2683533 |
T |
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