View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_low_40 (Length: 348)
Name: NF1270_low_40
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 17809849 - 17809686
Alignment:
| Q |
91 |
gttaaatgagattctcttttactgcacattatggacaagttcactttagttgaaacacttatgtttcctttctcacattgtggtctataagtggtatatg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||| |
|
|
| T |
17809849 |
gttaaatgagattctcttttactgcacattatggacaagttcactttagttgaaacacttatgtttcctttctcacgttgtggcctacaagtgctatatg |
17809750 |
T |
|
| Q |
191 |
aataggtagtccttagagatgtgggtcttttgaaaaccatttaattccgacaatttatagtgct |
254 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17809749 |
aatatgtagtccttagaggtgtgggtcttttgaaaaccatttaattccgacaatttatagtgct |
17809686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 17813002 - 17812836
Alignment:
| Q |
95 |
aatgagattctcttttactgcacattatggacaagttcactttagttgaaacacttatgtttcctttctcac------attgtggtcta--ta--agtgg |
184 |
Q |
| |
|
|||||||||| || |||| ||||||||| || | || |||||||||||||| ||||| ||||||||||||| ||||||| ||| || ||||| |
|
|
| T |
17813002 |
aatgagattcctttctactacacattatgaactactttactttagttgaaactcttatttttcctttctcacgtgtatattgtggcctagctaggagtgg |
17812903 |
T |
|
| Q |
185 |
tatatgaatagg-tagtccttagagatgtgggtcttttgaaaaccatttaattccgacaatttatagtg |
252 |
Q |
| |
|
|||||||||||| || ||||| |||||| || ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
17812902 |
tatatgaataggttactcctt--agatgtaggccttttgatgaccattcaattccgacaatttatagtg |
17812836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University