View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_42 (Length: 331)
Name: NF1270_low_42
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 32852854 - 32853090
Alignment:
| Q |
11 |
agaataatgtggatacaacagggtattaaaagcaaaactgcaagaaagcagtgaagaattggaaagacatgtgagttcatactgaagttttttcatatga |
110 |
Q |
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| T |
32852854 |
agaataatgtggatacaacagggtattaaaagcaaaactgcaagaaagcagtgaagaattggaaagacatgtgagttcatactgaagttttttcatatga |
32852953 |
T |
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| Q |
111 |
atctactgaaacataatcaattcctaaacttatggtcaaatacaatacttcctggtccttattataagaag-nnnnnnnntcagtttttagattttttgg |
209 |
Q |
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| T |
32852954 |
atctactgaaacataatcaattcctaaacttatggtcaaatacaatacttcctcgtccttattataagaagaaaaaaaaatcagtttttagattttttgg |
32853053 |
T |
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| Q |
210 |
gtctccataaccaagtgattgaatataaccgcatatt |
246 |
Q |
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| T |
32853054 |
gtctccataaccaagtgattgaatataaccgcatatt |
32853090 |
T |
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