View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_44 (Length: 326)
Name: NF1270_low_44
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 20078396 - 20078579
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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| T |
20078396 |
ttatccacttgatttaatttccaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaa |
20078495 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatat |
248 |
Q |
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| T |
20078496 |
catggcctctacatactcaatagtattacttctacttggaatgatgatggttaccactttcgtgggtgctggaaggtttaatat |
20078579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 20084690 - 20084873
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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| T |
20084690 |
ttatccacttgatttaatttccaacataatagtctcatgtgttttcctataaatagctttctcgctcattctatttatttaaattaaaattcgatccaaa |
20084789 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatat |
248 |
Q |
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| T |
20084790 |
catggcctctacatattcaatagtattacttctacttgaaatgatgatggttaccactttcgtgggtgctggaaagtctaatat |
20084873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 20071377 - 20071545
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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| T |
20071377 |
ttatccatttgatttcatttccaacacaataatctcatgtgttttcttataaatagctgtctcgctcattccatttgtgtaaattaaaattcgatccaaa |
20071476 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgc |
233 |
Q |
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| T |
20071477 |
catggcctctacatactcattagtattacttctacttggaacgatggtggttaccactgtcgtgggtgc |
20071545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 248
Target Start/End: Original strand, 20097395 - 20097556
Alignment:
| Q |
87 |
caacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattc-aatccaaacatggcctctacatactcaa |
184 |
Q |
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| T |
20097395 |
caacacaatagtctcatgtgttttcctataaatagctgtctcgctcattccatttgtgtaaat--aaattcgattaaaaacatggcctctacatactcaa |
20097492 |
T |
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| Q |
185 |
tactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatat |
248 |
Q |
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| T |
20097493 |
tagtattacttctatttggaatgatgatggttaccactgtcgtgggtgcgggaagatctaatat |
20097556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 20067301 - 20067443
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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|||| |||||||||||||||||||||||| |||||| | ||| |||| |||||||| |||||| || ||||||||| || |||||||||||| ||||||| |
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| T |
20067301 |
ttattcacttgatttaatttccaacacaatagtctcgtgtgttttcctataaatagctgtctcacttattccatttatgtaaattaaaattcgatccaaa |
20067400 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatg |
207 |
Q |
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| T |
20067401 |
catggcctctaaatattcactagtattacttatacttggaatg |
20067443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 20116033 - 20116158
Alignment:
| Q |
108 |
ttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatg |
207 |
Q |
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|||| |||||||| ||||| ||| ||||||| || ||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20116033 |
ttcctataaatagttgtcttgcttgttccattaatgtgaatcaaaattcgataaaaacatggcctctacatactcaatagtattacttctacttggaatg |
20116132 |
T |
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| Q |
208 |
atgatggttaccactttcgtgggtgc |
233 |
Q |
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| T |
20116133 |
atgatggttaccactgtcgtgggtgc |
20116158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20054258 - 20054354
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatgatg |
210 |
Q |
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| T |
20054258 |
ataaatagatgtctcactctttccatttgtgtgaatcaaa-ttccataataacatggcctctaaatactcactagtattacttctacttggaatgatg |
20054354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20048687 - 20048783
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatgatg |
210 |
Q |
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| T |
20048687 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaat-ctataaaaacatggcctctaaatactcacaagtattacttctacttggaatgatg |
20048783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20038519 - 20038618
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaa---tactattacttctacttggaatgat |
209 |
Q |
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| T |
20038519 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaat-ctataaaaacatggcctctaaatactcacaagtattattacttctacttggaatgat |
20038617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 2913979 - 2913923
Alignment:
| Q |
164 |
acatggcctctacatactcaatactattacttctacttggaatgatgatggttacca |
220 |
Q |
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| T |
2913979 |
acatggcctctacatgctcactaatattatttctacttggtatgataatgcttacca |
2913923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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