View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_5 (Length: 581)
Name: NF1270_low_5
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_5 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 30 - 568
Target Start/End: Complemental strand, 23776 - 23241
Alignment:
| Q |
30 |
catagatatgcaataaagactgcacttgacagaattcagaaaaagctttattaactgaaaacttatagagtgcatcgaggtttttcaagacatccatgcc |
129 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
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| T |
23776 |
catagatatgcaataaagactgtacctgacagaattcagaaaaagccttattaactgaaaacttgaagagtgcatcgaggttgcgcaaaacatccatgcc |
23677 |
T |
|
| Q |
130 |
aacagaaagtaactctgaactccaataactctgagcaaaagaaactaaaggttgaacatcaacagagactagcctacccttcttctttagaaacctatca |
229 |
Q |
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|||||| ||||||||||||||||||||| | ||| ||| |||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||| |
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| T |
23676 |
aacagatagtaactctgaactccaataattttgaacaacagaaactaaaggttgaacattaacagagactagcctaccattctt---tagcaacctatct |
23580 |
T |
|
| Q |
230 |
cccaatttcatcacccaggtagcatcagggatgagcaaaaggtaaatgtcagttagattataaatctgcttctgaacacccagacaattcaatgcaaact |
329 |
Q |
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|||||||| |||||||| | ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| | |||| |||||||||| |
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| T |
23579 |
cccaattttttcacccagtttgcatcagggatgagcaaaaggtaaacgtctttgagattataaatctgcttctgaacacccaaataattgaatgcaaact |
23480 |
T |
|
| Q |
330 |
ttacataactgttatgctgatgagactctggagttttgaaatttgaaaggaaatcaagcatttgaacaatattatccttccaatatgtccaacaataaaa |
429 |
Q |
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||||||||||| ||||||||||| |||| ||| |||||||||||||||| | || ||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
23479 |
ttacataactgcaatgctgatgaggctcttgaggtttgaaatttgaaagggattctagcatatgaacaatgttatccttccaacatgtccaacaataaaa |
23380 |
T |
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| Q |
430 |
caatgtttccacagaaaattgattcttcataatcatgccttcaacagaaacatcaaacaagctgtcttgccagacatacttagatgagttcagccgaaaa |
529 |
Q |
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| T |
23379 |
caatgtctccacggaaaaatgatttttcaaaatcatgccttcaacagaaacatctaacatattgtcttgccatacatacttagaggtgttcatacgaaaa |
23280 |
T |
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| Q |
530 |
tgagaatccagcagtttccacaaacataatatttcccct |
568 |
Q |
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| T |
23279 |
tgagaatccagcagtttcctcaaacataatatttcccct |
23241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 28403421 - 28403028
Alignment:
| Q |
30 |
catagatatgcaataaagactgcacttgacagaattcagaaaaagctttattaactgaaaacttatagagtgcatcgaggtttttcaagacatccatgcc |
129 |
Q |
| |
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|||||||||||||||||| ||| ||| |||||||||| |||||| | |||| || ||||||||| ||||||| | |||||| | || |||||||||||| |
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| T |
28403421 |
catagatatgcaataaaggctgtactcgacagaattcggaaaaatccttatgaattgaaaacttgtagagtgtgttgaggttgtgcaggacatccatgcc |
28403322 |
T |
|
| Q |
130 |
aacagaaagtaactctgaactccaataactctgagcaaaagaaactaaaggttgaacatcaacagagactagcctacccttcttctttagaaacctatca |
229 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| || || |
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| T |
28403321 |
aacagaaagtaattctgaagtccaataactctgagcaaaagaaactagaggttgaacatcaacagaaactagcctaccactcttctttagaaatctctct |
28403222 |
T |
|
| Q |
230 |
cccaatttcatcacccaggtagcatcagggatgagcaaaaggtaaatgtcagttagattataaatctgcttctgaacacccagacaattcaatgcaaact |
329 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| | ||||||||||||||| |
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| T |
28403221 |
cccaattttatcacccagttagcatcagggatgagcaaaaggtaaatgtcattaagattataaatctgcttctaaacacccaaataattcaatgcaaact |
28403122 |
T |
|
| Q |
330 |
ttacataactgttatgctgatgagactctggagttttgaaatttgaaaggaaatcaagcatttgaacaatattatccttccaatatgtccaaca |
423 |
Q |
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||||||||||| ||||||||||| |||| |||||||||||||||||| || || || || |||||||| |||||||||||| |||||||||| |
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| T |
28403121 |
ttacataactgctatgctgatgaagctcttgagttttgaaatttgaaaagagttccagaatatgaacaatgttatccttccaacatgtccaaca |
28403028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 418 - 576
Target Start/End: Complemental strand, 28398500 - 28398342
Alignment:
| Q |
418 |
ccaacaataaaacaatgtttccacagaaaattgattcttcataatcatgccttcaacagaaacatcaaacaagctgtcttgccagacatacttagatgag |
517 |
Q |
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||||||| |||||||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||| |
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| T |
28398500 |
ccaacaacaaaacaatgtctccacggaaagttgattcttcataatcatgccttcgacagaaacatcaaacatactgtcttgccagacatactttgaggag |
28398401 |
T |
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| Q |
518 |
ttcagccgaaaatgagaatccagcagtttccacaaacataatatttcccctatgatact |
576 |
Q |
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|| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
28398400 |
tttaaccgaaaatgagaatccagcagttcccacaaacataatatttcccctctgatact |
28398342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 315 - 576
Target Start/End: Original strand, 34602046 - 34602307
Alignment:
| Q |
315 |
aattcaatgcaaactttacataactgttatgctgatgagactctggagttttgaaatttgaaaggaaatcaagcatttgaacaatattatccttccaata |
414 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||| | || ||||| |||||||| |||||||||||| | |
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| T |
34602046 |
aattcaatgcaaactttacataactgctatgctgatgaggctcttgaactttgaaatttgaaagggattctagcatatgaacaatgttatccttccaaca |
34602145 |
T |
|
| Q |
415 |
tgtccaacaataaaacaatgtttccacagaaaattgattcttcataatcatgccttcaacagaaacatcaaacaagctgtcttgccagacatacttagat |
514 |
Q |
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||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34602146 |
tgttcaactataaaacaatgtctccacggaaaattgattcttcataatcatgccttcgacagaaacatcaaacaagctgtcttgccagacatacttagag |
34602245 |
T |
|
| Q |
515 |
gagttcagccgaaaatgagaatccagcagtttccacaaacataatatttcccctatgatact |
576 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34602246 |
gagtttagccgaaaatgagaatccagcagtttccacaaacataatatttcccctctgatact |
34602307 |
T |
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