View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_50 (Length: 315)
Name: NF1270_low_50
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 31604591 - 31604767
Alignment:
| Q |
48 |
aagaatattgataatggttggtgtgctttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctctta |
147 |
Q |
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| T |
31604591 |
aagaagattgataatggatggtgtgttttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctctta |
31604690 |
T |
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| Q |
148 |
tttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgtggttattcctgttaaccatagaac |
224 |
Q |
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| T |
31604691 |
tttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgtggttattcctgttaaccatagaac |
31604767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 31594339 - 31594511
Alignment:
| Q |
48 |
aagaatattgataatggttggtgtgctttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctctta |
147 |
Q |
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| T |
31594339 |
aagaagattgatcatggatggtatgttttcttgatcgtgtacacatgccatgagacgtagctcaatatctgaagctgattgttcaatggttcttctctta |
31594438 |
T |
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| Q |
148 |
tttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgtggttattcctgttaaccata |
220 |
Q |
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| T |
31594439 |
tttaaggacaaatatctcttagatgggtcatataggaatttcacaatgggtgtgattagtcctgttacccata |
31594511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 31578812 - 31578964
Alignment:
| Q |
48 |
aagaatattgataatggttggtgtgctttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctctta |
147 |
Q |
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| T |
31578812 |
aagaagattgataatggatggtgtgttttcttgactgtgtatacatgccaagatacgaagttcaatatctgaagttgattgttcaatggttcttctccta |
31578911 |
T |
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| Q |
148 |
tttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgt |
200 |
Q |
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| T |
31578912 |
tttaaggataagtacctcttagatggatcatataggaatttcacaatgggtgt |
31578964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 31563458 - 31563610
Alignment:
| Q |
48 |
aagaatattgataatggttggtgtgctttcttgactgtgtacacatgccatgagacgtagctcaatatctgaagttgattgttcaatggttcttctctta |
147 |
Q |
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| T |
31563458 |
aagaagattaataatggatggtgtgttttcttgactatgtatacatgccatgagacttagttcggtatctgaagttgattgttcaatggttcttctccta |
31563557 |
T |
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| Q |
148 |
tttaaggacaaatatctcttagatgggtcatataggaatttcaaaatgggtgt |
200 |
Q |
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| T |
31563558 |
tttaaggataagtatttcttagatggatcatataggaatttcacaatgggtgt |
31563610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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