View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270_low_52 (Length: 314)

Name: NF1270_low_52
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270_low_52
NF1270_low_52
[»] chr6 (3 HSPs)
chr6 (105-281)||(12977167-12977342)
chr6 (105-285)||(13013125-13013311)
chr6 (109-162)||(13009570-13009623)


Alignment Details
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 12977167 - 12977342
Alignment:
Q  105 aataaaaacattagatttagatgccataaacttgatggaataaccataaaagatatagttatgtnnnnnnnnnccttaacatacataaattgtatagagt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||||||||||||||||||||||| |    
T  12977167 aataaaaacattagatttagatgccataaacttgatggaataaccataaaagatttagttatgtaaaaaaaaaccttaacatacataaattgtatagatt 12977266  T
Q  205 ttgtatcccnnnnnnnnntaggtgtagagtttaggtttggaattaggccttcgaggtctatgctctttgattttgtc 281  Q
    ||||| |||         ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12977267 ttgtaaccc-aaaaaaaataggtatagaatttaggtttggaattaggccttcgtggtctatgctctttgattttgtc 12977342  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 105 - 285
Target Start/End: Original strand, 13013125 - 13013311
Alignment:
Q  105 aataaaaacattagatttagatgccataaacttgatggaataaccataaaagatatagttatgtnnnnnnnnnccttaacatacataaattgtatagagt 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  13013125 aataaaaacattagatttagatgccataatcttgatggaataaccataaaagatatagttatgtaaaaaaaaaccttaacatacataaattgtatagagt 13013224  T
Q  205 ttgtatccc------nnnnnnnnntaggtgtagagtttaggtttggaattaggccttcgaggtctatgctctttgattttgtccctt 285  Q
    ||||| |||               ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  13013225 ttgtaacccaaaaaaaaaaaaaaataggtatagagtttaggtttggaattaggccttcgtggtctatgatctttgattttgtccctt 13013311  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 13009570 - 13009623
Alignment:
Q  109 aaaacattagatttagatgccataaacttgatggaataaccataaaagatatag 162  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13009570 aaaacattagatttagatgccataaacttgatggaacaaccataaaagatatag 13009623  T

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