View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_53 (Length: 313)
Name: NF1270_low_53
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 31933256 - 31933532
Alignment:
| Q |
8 |
ccaataatatacggtgatatattcaacgtgtctggtgagttatcatcacaacctattgcaccaagagatgctgcaaccatgcaatcagcagaagatagaa |
107 |
Q |
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| T |
31933256 |
ccaataaaatacggtgatatattcaacgtgtctggtgatttatcatcacagcctattgcaccaagagatgctgcaaccatgcaatcagcagaagatagaa |
31933355 |
T |
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| Q |
108 |
cattggaccatgctcgaaaagatggacctgcttcactcatgacttctgctgctcaaaagaatgaggatgctggtttcattgataatgacactgctacaaa |
207 |
Q |
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| T |
31933356 |
cattggaccatgctcgaaaagatgggcctgcttcactcatgacttctgctgctcaaaagaatgaggatgctggtttcattgataataacactgcaacaaa |
31933455 |
T |
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| Q |
208 |
tatagcaagaaatgaaggtgttgctgtttcagaaattaatgatggaggcaaacgtgttatcacagagacccttggtg |
284 |
Q |
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| T |
31933456 |
tatagcaagaaatgaaggtgttgctgtttcagaaattaataatggaggcaaacgtgttatcacagagacccttggtg |
31933532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 31936230 - 31936506
Alignment:
| Q |
8 |
ccaataatatacggtgatatattcaacgtgtctggtgagttatcatcacaacctattgcaccaagagatgctgcaaccatgcaatcagcagaagatagaa |
107 |
Q |
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||||||| |||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||| |
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| T |
31936230 |
ccaataaaatacggtgatgtgttcaatgtgtctggtgagttatcatcacaacccattgcaccaagagatgctgctaccatgcaatctgcagaatatagaa |
31936329 |
T |
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| Q |
108 |
cattggaccatgctcgaaaagatggacctgcttcactcatgacttctgctgctcaaaagaatgaggatgctggtttcattgataatgacactgctacaaa |
207 |
Q |
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| T |
31936330 |
catttggccagactagaaaagatgggcctgcttctctcatgacttctgctgcccaaaaaaatgaggatgctggtttcatcaaacataacactgctacaaa |
31936429 |
T |
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| Q |
208 |
tatagcaagaaatgaaggtgttgctgtttcagaaattaatgatggaggcaaacgtgttatcacagagacccttggtg |
284 |
Q |
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| T |
31936430 |
cattgcaagaaatgaaggtgttgctgtttcagaaacttatgatgggggcaaacgtgtcatcactgagactcttggtg |
31936506 |
T |
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