View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_57 (Length: 311)
Name: NF1270_low_57
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 96 - 299
Target Start/End: Original strand, 12024771 - 12024974
Alignment:
| Q |
96 |
ttaaggtgcaaaactaaaaattcatggtgtacaaacttcaagaagaataaggatattggtgcaatttttcaaagttgagggtgtgcagatgcacaccctg |
195 |
Q |
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| T |
12024771 |
ttaaggtgcaaaactaaaaattcagggtgtacaaaattcaagaagaataaggatattggtgcaatttttcaaagttgagggtgtgcagatgcacatcctg |
12024870 |
T |
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| Q |
196 |
tatacacactggattcgcccctgcttgccgtattattcacttgaagctttcctcttccccgtcacatgcacacaactttgtttgtcgtcttcaagtccac |
295 |
Q |
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| T |
12024871 |
tatacacactggattcgccccagcttgtcgtattattcacttgaagctttcctcttccccgtcacatgcacacaactttgtttgtcgtcttcaagtccac |
12024970 |
T |
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| Q |
296 |
ttca |
299 |
Q |
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|||| |
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| T |
12024971 |
ttca |
12024974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 102 - 300
Target Start/End: Original strand, 12017077 - 12017275
Alignment:
| Q |
102 |
tgcaaaactaaaaattcatggtgtacaaacttcaagaagaataaggatattggtgcaatttttcaaagttgagggtgtgcagatgcacaccctgtataca |
201 |
Q |
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| T |
12017077 |
tgcaaaactaaaaattcagggtgtgcaaaatgcaaaaagaatagggatattagtgcaatttttcaaagttgaggatgtgcaggtgcacaccttgattaca |
12017176 |
T |
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| Q |
202 |
cactggattcgcccctgcttgccgtattattcacttgaagctttcctcttccccgtcacatgcacacaactttgtttgtcgtcttcaagtccacttcat |
300 |
Q |
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| T |
12017177 |
cactggattcgctcctgcttgtcgttttattcacttggagctctcctcttccccgtcacatgcacacaactttgtctgtcgtcttcaaatccacttcat |
12017275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 12024547 - 12024640
Alignment:
| Q |
7 |
tgtgtttaactacagcagcagatcctgg-tccggttcaatacaggttaaatttttgaacattggtattataattaaaatcagaaattgaattaa |
99 |
Q |
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| T |
12024547 |
tgtgtttaactacagcagcagatcctggatcccgttcgatacaggttaaatttttgaacattgatattataattaaaatcagaaattgaattaa |
12024640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 12016910 - 12016946
Alignment:
| Q |
63 |
acattggtattataattaaaatcagaaattgaattaa |
99 |
Q |
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| T |
12016910 |
acattggtattataattaaaatcagaaattgaattaa |
12016946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 32799135 - 32799084
Alignment:
| Q |
141 |
aataaggatattggtgcaatttttcaaagttgagggtgtgcagatgcacacc |
192 |
Q |
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| T |
32799135 |
aataaggatattggtgtagtttttcaaagttcagggtgtgcaggtgcacacc |
32799084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 8456592 - 8456685
Alignment:
| Q |
100 |
ggtgcaaaactaaaaattcatggtgtacaaacttcaagaagaataaggatattggtgcaatttttcaaagttgagggtgtgcagatgcacaccct |
194 |
Q |
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|||||||||||||||| | | |||| |||| | ||| ||| || |||||||| ||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
8456592 |
ggtgcaaaactaaaaactgagggtggtcaaaatgcaa-aagtatgaggatatttgtgtaatttttcaaagttcagggtgtgcaggtgcacaccct |
8456685 |
T |
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