View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_59 (Length: 295)
Name: NF1270_low_59
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_59 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 280
Target Start/End: Original strand, 8863929 - 8864170
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| ||||||||| ||||||| |
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| T |
8863929 |
aaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggacagcaggtatgagctatcttgtgcaaataatgttacaactt |
8864028 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttc |
238 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||| | |||||||| ||||| | |||| || |||||||| |
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| T |
8864029 |
tatatttgtattcgggaaaatatcatgtgcaatccatcaactacaacaatttcacaatcagactggttgatcccggagttcaacaatctaattgctcttc |
8864128 |
T |
|
| Q |
239 |
acttcctcgctattcgttgtctcgatctaatttctgtgatac |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||||| |
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| T |
8864129 |
acttcctcgctatttcttgtctcgatcggatttttgtgatac |
8864170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 39 - 284
Target Start/End: Original strand, 9072084 - 9072329
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
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|||||||| | ||||||||| |||||||||||| ||||||| || | |||||||||||| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
9072084 |
aaaatttccaacataagttacccatttcgattacaagatgaccccaaacactgcggagaaagcaggtacgaactatcttgtgaaaataatgtggcaactt |
9072183 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttc |
238 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||| || | | || |
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| T |
9072184 |
tatatttgtattcgggaaaatattatgtgcaatccatcaactacaacaatttcacaatccgagttgctgatcctggagtcatagaatataatttcaattt |
9072283 |
T |
|
| Q |
239 |
acttcctcgctattcgttgtctcgatctaatttctgtgatacctat |
284 |
Q |
| |
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|||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
9072284 |
acttccacattattcattgtctcgatctaatttctgtgatacctat |
9072329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 9065714 - 9065480
Alignment:
| Q |
51 |
ataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactttatatttgtatt |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9065714 |
ataagttatccatttcgattaaaagatgatccaatacactgcggtaacagcaagtatgaactatcttgtgaaaataatgtgacaactttatatttgtact |
9065615 |
T |
|
| Q |
151 |
cggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgcta |
250 |
Q |
| |
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| |||||| ||| | || |||||||||||| |||| ||||||||| | |||||||||||||| |||| || |||||||||||||| ||| | |
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| T |
9065614 |
ccacaaaatataatgtccgttccatcaactacaacaattttacaatcagactggttgatcctggagttcaagaaatgaattgctcttcacttccacgcca |
9065515 |
T |
|
| Q |
251 |
ttcgttgtctcgatctaatttctgtgatacctatg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
9065514 |
ttcgttgtctcgatctaatttctgtgatacttatg |
9065480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 8972447 - 8972206
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||| |||| || || ||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
8972447 |
aaaattttaaacatatgttatccatttcgattaaaagatgacccaaaacgttgtggagacagcaggtatgaactagcttgtgaaaataatgtcacaactt |
8972348 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttc |
238 |
Q |
| |
|
||||||| ||||| | ||||||| ||| | || |||||||||||| ||||||||||| || | |||||||||||| | | |||| || |||||||| |
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| T |
8972347 |
tatatttatattctgcaaaatatcatgtccggtcgatcaactacaacaatttcacaatccgattggttgatcctggaattcaacaatctaattgctcttc |
8972248 |
T |
|
| Q |
239 |
acttcctcgctattcgttgtctcgatctaatttctgtgatac |
280 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8972247 |
acttcctctctattcgttgtctcgatctaatttctgtgatac |
8972206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 63 - 284
Target Start/End: Original strand, 9136315 - 9136536
Alignment:
| Q |
63 |
tttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactttatatttgtattcggggaaatatc |
162 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||| ||||||||| |||||||||||||| | |||| ||||||||| || || | |||||| |
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|
| T |
9136315 |
tttcgattaaaagatgacccaaaacactgcggtgacagcagttatgaactagcttgtgaaaataatataacaagtttatatttatactctgcaaaatatt |
9136414 |
T |
|
| Q |
163 |
ttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttcacttcctcgctattcgttgtctcg |
262 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| || | |||||||||||||| | |||| || |||||||||||||||| |||||| |||||||| |
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|
| T |
9136415 |
atgtgcagtccatcaactacaacgatttcacaatccgattggttgatcctggagttcaacaatctaattgctcttcacttcctctctattctttgtctcg |
9136514 |
T |
|
| Q |
263 |
atctaatttctgtgatacctat |
284 |
Q |
| |
|
|||||||||||| ||||||||| |
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| T |
9136515 |
atctaatttctgcgatacctat |
9136536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 8868165 - 8868323
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
8868165 |
aaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggatagcaggtatgaactatcttgtgaaaataacgtgacaacct |
8868264 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatc |
197 |
Q |
| |
|
|| |||||||||| || |||||| |||| |||| |||||||||||| |||||| |||| |
|
|
| T |
8868265 |
taaatttgtattccggaaaatattatgtgaaatccatcaactacaacaatttcataatc |
8868323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 285
Target Start/End: Original strand, 9099611 - 9099857
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
||||| |||| ||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||| | |
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|
| T |
9099611 |
aaaatatcaaacataagttacccatttcgattaaaagatgacccaaaacaatgcggagacagcaggtacgaactagcttgtgaaaataatgtgacaaaat |
9099710 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttc |
238 |
Q |
| |
|
||||||| || || | ||||| | ||| || || ||||||||||| ||||||||||| || | |||||||||| ||| | |||| || |||||||| |
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|
| T |
9099711 |
tatatttatactctgcaaaataccatgtccagtccatcaactacaataatttcacaatccgattagttgatcctgaagttcaacaatctaattgctcttc |
9099810 |
T |
|
| Q |
239 |
acttcctcgctattcgttgtctcgatctaatttctgtgatacctatg |
285 |
Q |
| |
|
|||||| ||| |||| ||||||||||| ||||||||| |||| |||| |
|
|
| T |
9099811 |
acttccgcgccattccttgtctcgatcaaatttctgtaatacttatg |
9099857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 9007487 - 9007242
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
|||||||| | ||||| ||| |||||||||||||| |||| ||||| | ||||| |||| ||||| ||| || | |||||||||||||||||||||| |
|
|
| T |
9007487 |
aaaatttccaacataacttacccatttcgattaaataatgacccaattaattgcggggacaaaaggtacgaattagcatgtgaaaataatgtgacaactt |
9007388 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaatccaactgctcttc |
238 |
Q |
| |
|
|| |||||||||| || ||||||| ||||||||| |||||||||||| ||||||||||| || | ||||||| |||||| | |||| || |||||||| |
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|
| T |
9007387 |
taaatttgtattcaggaaaatatcatgtgcaatccatcaactacaacaatttcacaatccgattggttgatcttggagttcaacaatctaattgctcttc |
9007288 |
T |
|
| Q |
239 |
acttcctcgctattcgttgtctcgatctaatttctgtgatacctat |
284 |
Q |
| |
|
| |||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
9007287 |
tatacctctttattctttgtctcaatctaatttctgtgatacctat |
9007242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 9093253 - 9093413
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
|||||||| | ||||| ||||||||||||| ||||| |||| ||||| || ||||| |||| || || || |||||||||||||||||||| ||||| |
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|
| T |
9093253 |
aaaatttccaacataacttatccatttcgactaaaaaatgacccaattcattgcgggaacagaagttacgagctatcttgtgaaaataatgtaacaacaa |
9093352 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcag |
199 |
Q |
| |
|
|| ||||||| || | ||||| |||| | || |||||||||||| ||||||||||||| |
|
|
| T |
9093353 |
taaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcag |
9093413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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