View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270_low_6 (Length: 578)

Name: NF1270_low_6
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270_low_6
NF1270_low_6
[»] chr6 (3 HSPs)
chr6 (9-226)||(29598508-29598721)
chr6 (271-538)||(29598156-29598431)
chr6 (494-535)||(33631644-33631685)
[»] chr4 (2 HSPs)
chr4 (277-352)||(27912828-27912904)
chr4 (494-535)||(31254440-31254481)
[»] chr3 (2 HSPs)
chr3 (454-543)||(52724011-52724099)
chr3 (505-536)||(36108605-36108636)
[»] chr8 (3 HSPs)
chr8 (449-533)||(29907761-29907844)
chr8 (483-535)||(18004129-18004180)
chr8 (468-544)||(20094818-20094893)
[»] chr1 (1 HSPs)
chr1 (449-516)||(17468310-17468376)
[»] chr7 (1 HSPs)
chr7 (493-543)||(1596837-1596887)
[»] chr5 (1 HSPs)
chr5 (494-535)||(19705913-19705954)
[»] chr2 (1 HSPs)
chr2 (494-543)||(1926466-1926515)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 4e-95; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 29598721 - 29598508
Alignment:
Q  9 caataatatcactaacttcacagcaggctattcaattttttccattatcacaatatttagccatacatataaaaaatcaattactgatctcgtggttata 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  29598721 caatattatcactaacttcacagcaggctattcaattttttccattattacaatagttagctatacatttaaaaaatcaattactgatctcgtggttata 29598622  T
Q  109 acttatagtaatatattcatttccatctcgaaagactccgattccatgtgataaactctacggccggaccatcaatcaatattcaaatgcaactatgttt 208  Q
    ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29598621 ac----agtaatatattcatttccatctcgaaagactccgattccatgtgataaactctacggccggaccatcaatcaatattcaaatgcaactatgtct 29598526  T
Q  209 atatgtctgtcaaaaata 226  Q
    ||||||||||||||||||    
T  29598525 atatgtctgtcaaaaata 29598508  T

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Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 271 - 538
Target Start/End: Complemental strand, 29598431 - 29598156
Alignment:
Q  271 atggcatgtttgtttgtacgttggtaagagagtagacgtgcgtttattgagaagcccaaatactagcttcacaatattacgttgaattttgtctcggggt 370  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||| |    
T  29598431 atggcatgtttgtttgtaagttggtaagagaatagacgtgcgtttattgagaagcctaaatactatcttcacaatatcacgttgaattttgcctcgggat 29598332  T
Q  371 gcaaaaatcgtgcctccaatgcacatccaaacagaggctaagtcttttgagtggggataagttgcagttctt-tctct--------ttgttaaagagtcc 461  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||        |||||||||||||     
T  29598331 gcaaaaatcatgcctccagtgcacatccaaacagaggctaagtcttttgagtggggataagtggcagttcttctttctttcaacacttgttaaagagtct 29598232  T
Q  462 catgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgtagg 538  Q
    ||||| ||||||||||| ||||||||||||  ||||||| ||||||  |||||||||||||||| || |||||||||    
T  29598231 catgtcggataaaagatggtttgacaatat-atttataagtgggggtcatcctcaccttataaaccgattttgtagg 29598156  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 33631685 - 33631644
Alignment:
Q  494 tttataactgggggcaatcctcaccttataaatcggttttgt 535  Q
    ||||||| ||||||||||||||||| |||||| |||||||||    
T  33631685 tttataagtgggggcaatcctcaccatataaaccggttttgt 33631644  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 27912904 - 27912828
Alignment:
Q  277 tgtttgtttgtacgttggtaagagagtagacgtgcgtttattgagaagcc-caaatactagcttcacaatattacgt 352  Q
    ||||||||||| ||||||   || |||| ||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  27912904 tgtttgtttgtgcgttggggggaaagtaaacgtgtgtttattgagaagccacaaatactagcttcacaatatcacgt 27912828  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Complemental strand, 31254481 - 31254440
Alignment:
Q  494 tttataactgggggcaatcctcaccttataaatcggttttgt 535  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  31254481 tttataagtgggggcaatcctcaccttacaaaccggttttgt 31254440  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 543
Target Start/End: Complemental strand, 52724099 - 52724011
Alignment:
Q  454 aagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 543  Q
    ||||||||||  | ||||| |||||| | | ||||||||||| |||| | |||||||||||||||| |||||||| ||||||||| ||||    
T  52724099 aagagtcccacatcggatagaagataatctaacaatatgttt-ataaattggggcaatcctcacctcataaatcgattttgtaggattgt 52724011  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 536
Target Start/End: Original strand, 36108605 - 36108636
Alignment:
Q  505 gggcaatcctcaccttataaatcggttttgta 536  Q
    ||||||||||||||||||||||||||||||||    
T  36108605 gggcaatcctcaccttataaatcggttttgta 36108636  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 29907844 - 29907761
Alignment:
Q  449 tgttaaagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggtttt 533  Q
    |||||||||||||||  | |||||| ||||||| ||||||| || ||||||| ||||| |||||||||||| | || ||||||||    
T  29907844 tgttaaagagtcccacatcggataagagatagtctgacaatgtg-tttataagtggggtcaatcctcacctcacaagtcggtttt 29907761  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 535
Target Start/End: Complemental strand, 18004180 - 18004129
Alignment:
Q  483 tgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgt 535  Q
    ||||||||||||| |||| |||||||||||||||||  |||| ||||||||||    
T  18004180 tgacaatatgttt-ataagtgggggcaatcctcaccccataagtcggttttgt 18004129  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 544
Target Start/End: Complemental strand, 20094893 - 20094818
Alignment:
Q  468 ggataaaagatagtttgacaatatgttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgtt 544  Q
    ||||||||||| || | ||||||||||| |||  |||||||||||||||||||| ||  ||||||||| || |||||    
T  20094893 ggataaaagatggtcttacaatatgttt-atatgtgggggcaatcctcaccttacaagccggttttgtggggttgtt 20094818  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 516
Target Start/End: Original strand, 17468310 - 17468376
Alignment:
Q  449 tgttaaagagtcccatgttggataaaagatagtttgacaatatgttttataactgggggcaatcctca 516  Q
    |||||||||||||||  | |||||| |||| || |||||||||| ||||||| |||||||||||||||    
T  17468310 tgttaaagagtcccacatcggataagagatggtctgacaatatg-tttataagtgggggcaatcctca 17468376  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 543
Target Start/End: Original strand, 1596837 - 1596887
Alignment:
Q  493 ttttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 543  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||| ||||    
T  1596837 ttttataagtgggggcaatcctcaccttacaagccggttttgtagggttgt 1596887  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 19705913 - 19705954
Alignment:
Q  494 tttataactgggggcaatcctcaccttataaatcggttttgt 535  Q
    ||||||| |||||||||||||||||||||||  |||||||||    
T  19705913 tttataagtgggggcaatcctcaccttataagccggttttgt 19705954  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 543
Target Start/End: Complemental strand, 1926515 - 1926466
Alignment:
Q  494 tttataactgggggcaatcctcaccttataaatcggttttgtaggcttgt 543  Q
    ||||||| |||||| ||||||||||| | |||||||||||||||| ||||    
T  1926515 tttataagtgggggtaatcctcacctcacaaatcggttttgtaggattgt 1926466  T

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