View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_61 (Length: 288)
Name: NF1270_low_61
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_61 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 28 - 288
Target Start/End: Original strand, 45295050 - 45295310
Alignment:
| Q |
28 |
agctgcacaggaagcagcagagagatcattgaagctagctgatagtagaggagttgaactgcgtcggtggatagaggaactaaccagacaactagaggaa |
127 |
Q |
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| T |
45295050 |
agctgcacaggaagcagcagagagatcattgaagctagctgatagtagaggagttgaactgcgtcggtggatagaggaactaaccagacaactagaggaa |
45295149 |
T |
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| Q |
128 |
tcagagaaacgtgaatgtaatagtcataaagtgagtcgacgtatatgttggccatggcaagttttcagattgagttctagcaatattgctacctctagaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45295150 |
tcagagaaacgtgaatgtaatagtcataaagtgagtcgacgaatatgttggccatggcaagttttcagattgagttctagcaatattgctacctctagaa |
45295249 |
T |
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| Q |
228 |
ttggaaatgccaaaaggatgataccagaaatgcaatcctttcttcaatgaaatgtgtatat |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45295250 |
ttggaaatgccaaaaggatgataccagaaatgcaatcctttcttcaatgaaatgtgtatat |
45295310 |
T |
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