View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_65 (Length: 272)
Name: NF1270_low_65
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 31067687 - 31067449
Alignment:
| Q |
23 |
ggttatttctttctcactcagaatgctccagatggttctttctttctgcttcatgcttgtgctcacaatcctactggagtagatccttcagaagaacaat |
122 |
Q |
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| T |
31067687 |
ggttatttctttctcactcagaatgctccagatggttctttctttctgcttcatgcttgtgctcacaatcctactggagtagatccttcagaagaacaat |
31067588 |
T |
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| Q |
123 |
ggagagagatctcttcccaattcaaggtaaaagagtggaatgatatattgagtcacggaattttgttcttgtttcagttatagactcttcttgttgttga |
222 |
Q |
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| T |
31067587 |
ggagagagatctcttcccaattcaaggtaaaagagaggaatgatatattgagtcatggaattttgttcttgtttcagttatagactctgctttttgttga |
31067488 |
T |
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| Q |
223 |
ttgttatatgattgttttcaggctaaaggtcatttccct |
261 |
Q |
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| T |
31067487 |
ttgttatatgattgttttcaggctaaaggtcatttccct |
31067449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 31075166 - 31074940
Alignment:
| Q |
32 |
tttctcactcagaatgctccagatggttctttctttctgcttcatgcttgtgctcacaatcctactggagtagatccttcagaagaacaatggagagaga |
131 |
Q |
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| T |
31075166 |
tttcttacacagaatgctccagatggttctttctttctgcttcatgcttgtgctcacaatcctactggagtagatccttcagaagaacaatggagagaga |
31075067 |
T |
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| Q |
132 |
tctcttcccaattcaaggtaaaagagtggaatgatatattgagtcacggaattttgttct---tgtttcagttatagactcttcttgttgttgattgtta |
228 |
Q |
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| T |
31075066 |
tctcttcccaattcaaggtaaaag---gcaatgatatattgaatcattg-attttgttctcgctgtttcaattattgacactttttgttgttcat--ttc |
31074973 |
T |
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| Q |
229 |
tatgattgttttcaggctaaaggtcatttccct |
261 |
Q |
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| T |
31074972 |
tatgattgtttgcaggctaaaggtcatttccct |
31074940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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