View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_7 (Length: 577)
Name: NF1270_low_7
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 16297481 - 16297808
Alignment:
| Q |
30 |
aaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaa |
129 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16297481 |
aaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaattgcatcttgatgctttgagattcaaagcaaa |
16297580 |
T |
|
| Q |
130 |
tttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaatt |
229 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16297581 |
tttgcacatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgttgaaaatattgataccaatt |
16297680 |
T |
|
| Q |
230 |
caaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgcataa |
329 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16297681 |
caaaccacaagactttgagcaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgcataa |
16297780 |
T |
|
| Q |
330 |
tcaaaattagatgatatcggtattcaac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
16297781 |
tcaaaattagatgatatcggtattcaac |
16297808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 16305183 - 16305510
Alignment:
| Q |
30 |
aaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaa |
129 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16305183 |
aaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaattgcatcttgatgctttgagattcaaagcaaa |
16305282 |
T |
|
| Q |
130 |
tttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaatt |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16305283 |
tttgcacatcaatagagagcaatggcaggcttaacaaaagctgcatatacaaaaatagtaagccaatagcataaaaatgttgaaaatattgataccaatt |
16305382 |
T |
|
| Q |
230 |
caaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgcataa |
329 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16305383 |
caaaccacaagactttgagtaaaaatacgtacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgcataa |
16305482 |
T |
|
| Q |
330 |
tcaaaattagatgatatcggtattcaac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
16305483 |
tcaaaattagatgatatcggtattcaac |
16305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 410 - 489
Target Start/End: Original strand, 16297861 - 16297940
Alignment:
| Q |
410 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
489 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16297861 |
cacatactggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16297940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 410 - 489
Target Start/End: Original strand, 16305563 - 16305642
Alignment:
| Q |
410 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
489 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16305563 |
cacatacttgcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactc |
16305642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 357
Target Start/End: Original strand, 22894968 - 22895295
Alignment:
| Q |
30 |
aaactataattatagaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaa |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22894968 |
aaactataattatacaaccagaacaaataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatactttgagattcaaagcaaa |
22895067 |
T |
|
| Q |
130 |
tttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaatt |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22895068 |
tttgcacatcaatagagagcaatggcaggcttaacaaaagctgcaaatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaatt |
22895167 |
T |
|
| Q |
230 |
caaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctgattctgcataa |
329 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
22895168 |
caaaccacaagactttgaggaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttactcaaattaatcttctggttctgcataa |
22895267 |
T |
|
| Q |
330 |
tcaaaattagatgatatcggtattcaac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22895268 |
tcaaaattagatgatatcggtattcaac |
22895295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 22895348 - 22895429
Alignment:
| Q |
410 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcag |
491 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22895348 |
cacatactagcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccactaagcagataaaaacactcag |
22895429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 15976019 - 15976163
Alignment:
| Q |
203 |
aaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttac |
302 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| || ||||||||||||||||| | || |||||||||| |||||||||||||||||| || || |
|
|
| T |
15976019 |
aaaatggtgaaaatattgaatcaaattcaaaccacaagacattgagcaaaaatacctatgtgttttcaacaaatgcaaatcacaagctgctcaaattcac |
15976118 |
T |
|
| Q |
303 |
tcaaattaatcttctgattctgcataatcaaaattagatgatatc |
347 |
Q |
| |
|
| |||| || ||| || |||||||||||||||| ||||||||||| |
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|
| T |
15976119 |
tgaaatcaaacttatggttctgcataatcaaaactagatgatatc |
15976163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 15975863 - 15975939
Alignment:
| Q |
56 |
ataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaattt |
132 |
Q |
| |
|
||||| ||||| ||||||||| |||||| ||||||||||||| | ||| | | ||||||||||||||| |||||| |
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|
| T |
15975863 |
ataaaataaacatgataaaatgcttacaacatccaaagtaaaagggatcataacactttgagattcaaagtaaattt |
15975939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 3873779 - 3874009
Alignment:
| Q |
56 |
ataaactaaacttgataaaatacttacatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgc---------ccatcaatagag |
146 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| |||| ||||| |
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|
| T |
3873779 |
ataaaataaacatgataaaatacttacatcatccaaagtaaaatggatcatgatgctttaagattcaaagcaaatttgcaacttaacatcatccatagac |
3873878 |
T |
|
| Q |
147 |
agcaatggcaggcttaacaaaagctgcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttg |
246 |
Q |
| |
|
| || ||||| |||||| |||||||||||| |||||| |||| ||| | ||| |||| | |||||||||||| | | |||||||||||| || ||| |
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|
| T |
3873879 |
aacattggcatgcttaattaaagctgcagatgcaaaaacggtaaaccacaaacatgaaaacggtgaaaatattgaatcaatttcaaaccacaagacattg |
3873978 |
T |
|
| Q |
247 |
agcaaaaatacctacatattatcaacaaatg |
277 |
Q |
| |
|
||||| |||||||| |||| |||||||||| |
|
|
| T |
3873979 |
agcaagaatacctatgtattttcaacaaatg |
3874009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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