View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_72 (Length: 259)
Name: NF1270_low_72
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 34029562 - 34029778
Alignment:
| Q |
13 |
aatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaaacagcagc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34029562 |
aatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaaacagcagc |
34029661 |
T |
|
| Q |
113 |
agaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
34029662 |
agaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaagtgacctaaaagcatagttccacctgcataca |
34029761 |
T |
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| Q |
213 |
ccaagttggtcttttaa |
229 |
Q |
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||||||||||||||||| |
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| T |
34029762 |
ccaagttggtcttttaa |
34029778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 34031497 - 34031714
Alignment:
| Q |
13 |
aatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaaacagcagc |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||| || ||||||||||| |
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| T |
34031497 |
aatattaaaaccttgcagtactaggaccccagcaattcaagtcaatgactttcctcatagattcttccttgcttctcttcaccttattcgaaacagcagc |
34031596 |
T |
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| Q |
113 |
agaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaaca |
212 |
Q |
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||| |||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |
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| T |
34031597 |
agatgaagcagaggacaatttcttggcttgagagtatgatctaatattgttcttagcatgttgatgaagtgatctaaaagcatagttccacctgcataca |
34031696 |
T |
|
| Q |
213 |
ccaagttggtcttttaat |
230 |
Q |
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|||||||||||||||||| |
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| T |
34031697 |
ccaagttggtcttttaat |
34031714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 34026634 - 34026850
Alignment:
| Q |
13 |
aatattaaaaccttgcagtactaggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaaacagcagc |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
34026634 |
aatattaaaaccttgaagtactaggaccccgacaattcaagtcaatgactttcctcatagattcttccttgcttctcttcaccttgttggaaacagcagc |
34026733 |
T |
|
| Q |
113 |
agaagaagcagatgacaatttcttagcctgagtgtatgatctaatattgttcttagcatgttgatgaattgacctaaaagcatagttccacctgcaaaca |
212 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| ||||||| || ||||||| || |||||||||||| ||| |
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| T |
34026734 |
agaagaagcagatgacaatttcttggccttagtgtatgatctgatattgctcttagcatgctgatgaaaggatctaaaagaatggttccacctgcataca |
34026833 |
T |
|
| Q |
213 |
ccaagttggtcttttaa |
229 |
Q |
| |
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||||||||||||||||| |
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| T |
34026834 |
ccaagttggtcttttaa |
34026850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 34034675 - 34034743
Alignment:
| Q |
36 |
ggaccccaacaattcaagtccatgactttcttcatagattcttccttggttcttttcaccttgttggaa |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
34034675 |
ggaccccaacaattcaggtccatgactttcttcatagattcttccttgtttctcttccccttgttggaa |
34034743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 38019427 - 38019382
Alignment:
| Q |
34 |
taggaccccaacaattcaagtccatgactttcttcatagattcttc |
79 |
Q |
| |
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|||||||||||||| |||||| |||||||||| ||| ||||||||| |
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| T |
38019427 |
taggaccccaacaactcaagtacatgactttcctcaaagattcttc |
38019382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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