View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_77 (Length: 251)
Name: NF1270_low_77
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 2697382 - 2697442
Alignment:
| Q |
86 |
aatatatatctgcaaaattctttatatttaaccagtcatccaaatcaatagctaagcttcc |
146 |
Q |
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| T |
2697382 |
aatatatatctgcaaaattctttatatttaaccactcatccaaatcaacagctacgcttcc |
2697442 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 2706272 - 2706335
Alignment:
| Q |
87 |
atatatatctgcaaaattctttatatttaaccagtcatccaaatcaatagctaagcttcccaca |
150 |
Q |
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| T |
2706272 |
atatatatctgcagaattcttgagatttaaccactcatccaaatcaacagctaagcttcccaca |
2706335 |
T |
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