View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_78 (Length: 251)
Name: NF1270_low_78
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 5983175 - 5983385
Alignment:
| Q |
13 |
aatatcggtccagatatgtattgtaatcggtaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaa |
112 |
Q |
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| T |
5983175 |
aatatcggtggagatatgtattgtaatcggtaacactggtatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaa |
5983274 |
T |
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| Q |
113 |
aattatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattc |
212 |
Q |
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| T |
5983275 |
aattatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatgtcatttcaggaacaacttcaagtggaattc |
5983374 |
T |
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| Q |
213 |
accatcctggt |
223 |
Q |
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| T |
5983375 |
accatcctggt |
5983385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 5961944 - 5962020
Alignment:
| Q |
146 |
tgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggt |
223 |
Q |
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| T |
5961944 |
tgattcagtttggttttgtttgtatt-gtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggt |
5962020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5961794 - 5961842
Alignment:
| Q |
56 |
ctgattgtttacatgatcattgttggtgagaccatattcttaattctag |
104 |
Q |
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| T |
5961794 |
ctgattgtttacatgatcattattggtgagaccttattcttaagtctag |
5961842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 5933379 - 5933443
Alignment:
| Q |
158 |
gttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggt |
223 |
Q |
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| T |
5933379 |
gttttgttcgtatt-gtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggt |
5933443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 5967414 - 5967467
Alignment:
| Q |
171 |
ttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtg |
224 |
Q |
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| T |
5967414 |
ttgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtg |
5967467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 5967310 - 5967349
Alignment:
| Q |
65 |
tacatgatcattgttggtgagaccatattcttaattctag |
104 |
Q |
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| T |
5967310 |
tacatgatcattattggtgagaccatattcttaagtctag |
5967349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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