View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_79 (Length: 251)
Name: NF1270_low_79
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_79 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 13537398 - 13537640
Alignment:
| Q |
8 |
ccaataatatgtgtggtctacaactataagattcacacaatattatagtaaaatgagacttaacaatcaagtgattatatatatccagttacgttagaat |
107 |
Q |
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| T |
13537398 |
ccaataaaatgtgtggtctacaactataagattcacacaatattatagtaaaat-agacttaacaatcaagtgattaaatatatccagttacattagaat |
13537496 |
T |
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| Q |
108 |
tgatctctaacgaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccga |
207 |
Q |
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| T |
13537497 |
tgatctatgacaaaaacaatttttagtcgaactttactttcattttgagggaaccaacttatataaattatgatggttgtattgtaggtggcaaaaccga |
13537596 |
T |
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| Q |
208 |
ctatgtgctacacaaattagaagcagtagatgaagcaaacttgg |
251 |
Q |
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| T |
13537597 |
ctatgtgctacacaaattagaagcaatggatgaagcaaacttgg |
13537640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 13541488 - 13541681
Alignment:
| Q |
58 |
aaatgagacttaacaatcaagtgattatatatatccagttacgttagaattgatctctaacgaaaacaatttttagtcgaactttactttcattttgagg |
157 |
Q |
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| T |
13541488 |
aaatgagattcaacaatcaagtaattaacgatatccagttacgttcagattgatcaatgacttaaacaatttttagtcaaacttta-tttaaatttgagg |
13541586 |
T |
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| Q |
158 |
gaaccaa-cttatataaattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaacttgg |
251 |
Q |
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| T |
13541587 |
gaacaaaacttatataaattatgatggtttaattgtaggtggtaaaaccgactttgtgctacacaaattagaagcaatggatgaggcaaacttgg |
13541681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 13554421 - 13554497
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaactt |
249 |
Q |
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| T |
13554421 |
aattataatggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactt |
13554497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 13530699 - 13530774
Alignment:
| Q |
173 |
aattatgatggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcagtagatgaagcaaact |
248 |
Q |
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| T |
13530699 |
aattataatggttatattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaact |
13530774 |
T |
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