View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_88 (Length: 222)
Name: NF1270_low_88
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 2950026 - 2950131
Alignment:
| Q |
81 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattggatagtttctgtcaaaatatttggatcatcttctac |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950026 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattggatagtttctgtcaaaatatttggatcatcttctac |
2950125 |
T |
|
| Q |
181 |
tatttg |
186 |
Q |
| |
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|||||| |
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| T |
2950126 |
tatttg |
2950131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 2933392 - 2933470
Alignment:
| Q |
82 |
atataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattggatagtttctgtcaaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || || ||||||| |
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|
| T |
2933392 |
atataaggctgagcagtaacaagaaacacactcttgaaaccaatacctgaaattcaaccataggaaagattatgtcaaa |
2933470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 3009382 - 3009325
Alignment:
| Q |
81 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3009382 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgtaattcaa |
3009325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 2924029 - 2924104
Alignment:
| Q |
84 |
ataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattggatagtttctgtcaa |
159 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | | || ||||||||| |
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|
| T |
2924029 |
ataaggctgagccgtaaccagaaacacactcttgaaaccaattcctgaaattcaaccatagcaaagattctgtcaa |
2924104 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 37798893 - 37798938
Alignment:
| Q |
97 |
gtaacaagaaacacactcttgaaaccaattcctgaaattcaaccat |
142 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37798893 |
gtaaccagaaacacactcttgaaaccaattcctgaaattcaaccat |
37798938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 4913496 - 4913431
Alignment:
| Q |
81 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattgga |
146 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4913496 |
aatataaggctgagcagtaaccagaaacacactcttgaaaccaattcctgaaattcaaccattgga |
4913431 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 1503694 - 1503637
Alignment:
| Q |
81 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1503694 |
aatataaggttgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaa |
1503637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 28027577 - 28027656
Alignment:
| Q |
81 |
aatataaggctgagcagtaacaagaaacacactcttgaaaccaattcctgaaattcaaccattggatagtttctgtcaaa |
160 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||| || ||||||||||||||||||| || || |||||||||| |
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|
| T |
28027577 |
aatatatggctgagcactaaccagaaacacactcttgaatccgattcctgaaattcaaccataagagagattctgtcaaa |
28027656 |
T |
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