View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_low_94 (Length: 212)
Name: NF1270_low_94
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 3535865 - 3535967
Alignment:
| Q |
5 |
atactttgagtttatactcaagtaggtgagtttgataaaaagacagcataagaatcaatatcatgttattcattgtagggtttctacatttttgttccct |
104 |
Q |
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| T |
3535865 |
atactttgagtttatactcaagtaggtgagtttgataaaaagacaacataagaatcaatatcatgttattcattgtagggtttctacatttttgttccct |
3535964 |
T |
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| Q |
105 |
ctc |
107 |
Q |
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| T |
3535965 |
ctc |
3535967 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 3481043 - 3480952
Alignment:
| Q |
11 |
tgagtttatactcaagtaggtgagtttgataaaaagacagcataagaatcaatatcatgttattcattgtagggtttctacatttttgttccc |
103 |
Q |
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||||||||||||||| |||| |||| ||||| |||| || ||| |||| ||||| ||||| ||| | ||||| |||||||| |||||||||| |
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| T |
3481043 |
tgagtttatactcaattagg-gagtctgatagaaaggcaacatcagaaccaataacatgtatttcgtcgtaggatttctacacttttgttccc |
3480952 |
T |
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