View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-6-Insertion-1 (Length: 950)
Name: NF1271-6-Insertion-1
Description: NF1271-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-6-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 162 - 828
Target Start/End: Original strand, 42189770 - 42190434
Alignment:
| Q |
162 |
tttggaattaattattttgcaggatgtgacgaactctatatatgaactatctaatgcatctcatcgttgatctgtttgcataatttctgtgagcggttct |
261 |
Q |
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| T |
42189770 |
tttggaattaatttttttgcaggatgtgatgaactctatatatgaactatctaatgcatctcatcgttgatctgtttgcataatttctgtgagcggttct |
42189869 |
T |
|
| Q |
262 |
gtatcaaa-----ggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcga |
356 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42189870 |
gtatcaaattaaaggttgtccttcatactccaaat----ggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcga |
42189965 |
T |
|
| Q |
357 |
tttagttaaattttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcaccatcaatcccaacaggtgaaattagacttggatgcaagt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
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| T |
42189966 |
tttagttaaattttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcatcatcaatcccaataggtgaaattaaacttggatgcaagt |
42190065 |
T |
|
| Q |
457 |
ggaggaaccaatataagcagcaatagaactcataatttcccctcaggttccaatgcacatttagtttaagcctaaaaagaggtataacagtgctactcca |
556 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42190066 |
ggaagaaccaatataagcagcaatagaactcataatttcccctcaggttccaatgcatatttagtttaagcctaaaaagaggtataacagtgctactcc- |
42190164 |
T |
|
| Q |
557 |
aaattcgaaatatgatacaaagtaaacatttaaaacaggtgaaaaaatatgtacagatgcattgcatggaattcgatccatataatttgaaatcacgata |
656 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
42190165 |
aaattcgaaatatgatac-aagt-aacatttaaaacaggtg-aaaaatatgtacagatgcattgcatggaattcgatccatagaatttgaaatcatgata |
42190261 |
T |
|
| Q |
657 |
agtctc-taagtttggcttcatgaaagccatagagtgactttagggtatgaaactcaaatgtgataagcttttaagtccaaaccttctacatttttaaat |
755 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
42190262 |
agtctcttaagtttggcttcatgaaagccatagagtgacttta-ggtatgaaactcaaatgtgataagcttttaagtccaaaccttctaaagttttaaat |
42190360 |
T |
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| Q |
756 |
tggtaaagttgattaggctgaaaa-actgtgaccaaaataaggtatgtataagtaattaacttagattactcct |
828 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
42190361 |
tggtaaagttgattaggctgaaaactatgtgaccaaaataaggtatgtataagtaattaacttcgatttctcct |
42190434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 42186957 - 42187110
Alignment:
| Q |
7 |
agtaagtacaagatctgacaaaccttatcaaaggatttgatggtgttcttcaaaaggtggaaaagataatagtcaagatgccaacgccatatagttatat |
106 |
Q |
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| T |
42186957 |
agtaagtacaagatctgacaaaccttatcaaaggatttgatggagttcttcaaaaggtggaagagataatagtcaagatgccaacgccatatagttatat |
42187056 |
T |
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| Q |
107 |
gatccagcaattttaaattcttgcaattcggaggtattatcatcataattcata |
160 |
Q |
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| T |
42187057 |
gatccagcaattttaaattcttgcaattcggaggtattatcatcataattcata |
42187110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 162 - 351
Target Start/End: Complemental strand, 19533511 - 19533328
Alignment:
| Q |
162 |
tttggaattaattattttgcaggatgtgacgaactctatatatgaactatctaatgcatctcatcgttgatctgtttgcataatttctgtgagcggttct |
261 |
Q |
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||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| |||| |
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| T |
19533511 |
tttggaattaattcttttgcaggatttgatgaactctatatatgaactatctaaggcatctcatcgtcgatctgtttgcataatttctatgagcgtttct |
19533412 |
T |
|
| Q |
262 |
gtatcaaaggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatct |
351 |
Q |
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| T |
19533411 |
g--tcaaaggtcgtccttcgtactcca----aatggtcctttcacacaacaggtacgtacatacataaattatcgatccaatctgaatct |
19533328 |
T |
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