View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-6-Insertion-4 (Length: 536)
Name: NF1271-6-Insertion-4
Description: NF1271-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-6-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 7 - 532
Target Start/End: Original strand, 18317768 - 18318293
Alignment:
| Q |
7 |
agtaacttgtgccacaaacaatggaatttcttcaataggttgactgtaatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcacca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18317768 |
agtaacttgtgccacaaacaatggaatttcttcaatgggttgattataatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcacca |
18317867 |
T |
|
| Q |
107 |
taatcatgaatactttttgtggtttcagcttctatcaaaacggctccttttgcattgagattcaattctattctaccaccttttgtgtaacaatatcgac |
206 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18317868 |
taatcatgaatactttttgtggtttcagcttctattaaaatagctccttttgcattgagattcaattctattctaccaccttttctgtaacaatatcgac |
18317967 |
T |
|
| Q |
207 |
cagctacaggatagtaatgaactaggattttgctgagtgagttctttaaggtttctatgattatgttttgttgattctgctttggtttgtatatgtatat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18317968 |
cagctacaggatagtaatgaactaggattttgctgagtgagttctttaaggtttctatgattatgttttgttgattctgttttggtttgtatatgtatat |
18318067 |
T |
|
| Q |
307 |
aactggtgtatggcttagacgcacaacttgatctaaatctgagaaccataaactaccctttggagttgattcatttggtgtgactgtgtaagaagctttt |
406 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18318068 |
aagtggtgtatggcttagacgcacaacttgatctaaatctgagaaccataaactaccctttggagttgattcatttggtgtgattgtgtaagaagctttt |
18318167 |
T |
|
| Q |
407 |
atggttaccattttggattctcttactttctgttttctctttgtatactttgttgctcatagatttttcatatgtatctatcaagttgtagctggggaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
18318168 |
atggttaccattttggattctcttactttctgttttctctttgtatactttgttgctcatagatttttcatatgtatctatcaagttgtaactagggaat |
18318267 |
T |
|
| Q |
507 |
tttttatactattgtattcaatattt |
532 |
Q |
| |
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|||||||| ||||||||| ||||||| |
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| T |
18318268 |
tttttatattattgtattgaatattt |
18318293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 419
Target Start/End: Complemental strand, 18272882 - 18272480
Alignment:
| Q |
20 |
acaaacaatggaatttcttcaataggttgactgtaatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaatac |
119 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
18272882 |
acaaacaatggcatttcttcaattggtttgttgtaatcaacttttggaataagctctttggtggagtcagaaggtgcaaagtcaccataatcatgaatac |
18272783 |
T |
|
| Q |
120 |
tttttgtggtttcagcttctatcaaaacggctccttttgcattgagattcaattctattctaccaccttttgtgtaacaatatcgaccagctacaggata |
219 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
18272782 |
tttttgagctttcagcttctatcaaaatagctccttttgcattgagattcaattatattctaccgccttttgtgtaagaatatcgaccagctacaggata |
18272683 |
T |
|
| Q |
220 |
gtaatgaactaggattttgctgagtgagttctttaaggtttctatgattatgttttgttgattctgctttggtttgtatatgtatataactggtgtat-- |
317 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||| ||| ||||||| || || || | |||||| | |
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| T |
18272682 |
gtagtgaactaggattttgctgagtgagttctttaaggtttctatgattttgttattttggttctggttttgtttgtagatatagatcagtggtgtgtgg |
18272583 |
T |
|
| Q |
318 |
-ggcttagacgcacaacttgatctaaatctgagaaccataaactaccctttggagttgattcatttggtgtgactgtgtaagaagcttttatggttacca |
416 |
Q |
| |
|
|| | | ||||||| |||||||| |||||||| ||||||| ||| ||||| ||| ||||||||| || || |||||||||||| |||||||||| |
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|
| T |
18272582 |
aggttgaaacgcacagtttgatctatatctgagagccataaatgaccatttggggttacttcatttggagtcacattgtaagaagcttgaatggttacca |
18272483 |
T |
|
| Q |
417 |
ttt |
419 |
Q |
| |
|
||| |
|
|
| T |
18272482 |
ttt |
18272480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 8323928 - 8324175
Alignment:
| Q |
18 |
ccacaaacaatggaatttcttcaataggttgactgtaatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaat |
117 |
Q |
| |
|
|||||||||||||||| ||||| | |||||| ||||||| | | |||||| |||||| |||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
8323928 |
ccacaaacaatggaatatcttccactggttgattgtaatctattattggaacaagctccatggttgaatcagaaggtgaaaaatcaccataatcatgaat |
8324027 |
T |
|
| Q |
118 |
actttttgtggtttcagcttctatcaaaacggctccttttgcattgagattcaattctattctaccaccttttgtgtaacaatatcgaccagctacagga |
217 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||| |
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|
| T |
8324028 |
tgtttttgtggtttcagcttcaagcaaaatagcaccttttgcattgagattcaactctattctaccaccttctttgtaacaataacgaccagctacagga |
8324127 |
T |
|
| Q |
218 |
tagtaatgaactaggattttgctgagtgagttctttaaggtttctatg |
265 |
Q |
| |
|
||||| | ||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
8324128 |
tagtagtaaactaggattttgctgagtgaattctttagggtttctatg |
8324175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 19996144 - 19996359
Alignment:
| Q |
22 |
aaacaatggaatttcttcaataggttgactgtaatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaatactt |
121 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
19996144 |
aaacaatggaatatcttccacaggttgactgtaatcaatttttggaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtt |
19996243 |
T |
|
| Q |
122 |
tttgtggtttcagcttctatcaaaacggctccttttgcattgagattcaattctattctaccaccttttgtgtaacaatatcgaccagctacaggatagt |
221 |
Q |
| |
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|||||||||||| |||| | ||||| || |||||||||||| |||||| |||| ||| ||||||| ||||||||||||| ||||||||| ||||||| |
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|
| T |
19996244 |
tttgtggtttcaacttcaagcaaaattgcaccttttgcattgcgattcagttctcttcgaccacctcttgtgtaacaataatgaccagctaatggatagt |
19996343 |
T |
|
| Q |
222 |
aatgaactaggatttt |
237 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
19996344 |
agtgaactaggatttt |
19996359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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