View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-6-Insertion-6 (Length: 117)
Name: NF1271-6-Insertion-6
Description: NF1271-6
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-6-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 7e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 4078381 - 4078272
Alignment:
| Q |
8 |
tccatcacaaccagctccgacctccgccgctttgtgttgcagaaaacctctaaaagccaccattaccgagcaaatcaaacaacaccatcaatacgattgg |
107 |
Q |
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| T |
4078381 |
tccatcacaaccagctccgacctccgccgctttgtgttgcagaaaacctctaaaagccaccattaccgagcaaatcaaacaacaccatcaatacgattgg |
4078282 |
T |
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| Q |
108 |
agagatgagg |
117 |
Q |
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|||||||||| |
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| T |
4078281 |
agagatgagg |
4078272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 16351648 - 16351757
Alignment:
| Q |
8 |
tccatcacaaccagctccgacctccgccgctttgtgttgcagaaaacctctaaaagccaccattaccgagcaaatcaaacaacaccatcaatacgattgg |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16351648 |
tccatcacaaccagctccgacctctgccgctttgtgttgcagaaaacctctaaaagccaccattaccgagcaaatcaaacaacaccatcaatacgattgg |
16351747 |
T |
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| Q |
108 |
agagatgagg |
117 |
Q |
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| T |
16351748 |
agagatgagg |
16351757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 26449634 - 26449527
Alignment:
| Q |
10 |
catcacaaccagctccgacctccgccgctttgtgttgcagaaaacctctaaaagccaccattaccgagcaaatcaaacaacaccatcaatacgattggag |
109 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449634 |
catcacaactagctccgacctccgccgctttgtgttgtagaaaacctctaaaagccacgattaccgagcaaatcaaacaacaccatcaatacgattggag |
26449535 |
T |
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| Q |
110 |
agatgagg |
117 |
Q |
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| T |
26449534 |
agatgagg |
26449527 |
T |
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