View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-7-Insertion-1 (Length: 990)
Name: NF1271-7-Insertion-1
Description: NF1271-7
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-7-Insertion-1 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 102 - 669
Target Start/End: Original strand, 8833292 - 8833845
Alignment:
| Q |
102 |
gaagtgaacggaaacgaaaacgcgatgatcgaagtgatctaagaagatgctccattggagagtgaagagatgaagggttgatatagtgacacgtcgtcgg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8833292 |
gaagtgaacggaaacgaaaacgcgatgatcgaagtgatctaagaagatgctccattggagagtgaagagatgaagggttgatatagtgacacgtcgtcgg |
8833391 |
T |
|
| Q |
202 |
tgttgatgttattgagaatatnnnnnnnnnnnnnnnnncgcgcggtggagtaaactgaaacagagagatagttaagtttattgccctagctttcctgctc |
301 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
8833392 |
tgtt-atgttattgagaatataagaagaa---------cgcgcggtggagtaaactgaaacggagagatagttaagtttattgctctagctttcctgctc |
8833481 |
T |
|
| Q |
302 |
aacaaggcagctagtgttgaacgtcagggtacaggtttaagttcatttacagaagatactacagggtttatcaccaaatcaaagactccttaacatctgt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8833482 |
aacaaggcagctagtgttgaacgtcagggtacaggtttaagttcatttac---agatactacagggtttatcaccaaatcaaagactccttaacatctgt |
8833578 |
T |
|
| Q |
402 |
aaattaaaattgttatttaaatgttttatatttaaaaacta--------nnnnnnnnnattcacaatactttatgtattattattcagtttaaactttaa |
493 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
8833579 |
aaatcaaaattgttatttaaatgttttatatttaaaaactattgtggattttttttttattcacaatactttatg--ttattattcag-------tttaa |
8833669 |
T |
|
| Q |
494 |
attcgaccggagagagaattcaataattatgtattatttctaatttatgaaatcaatcaattgtgtgtatatagtaaatgtcactttcacaatagtttag |
593 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
8833670 |
attcgaccggagagagaactcaataattatgtattatttctaatttatgaaatcaatcaattgtgtgtgtatagtgaatgtcactttcacaatagtttag |
8833769 |
T |
|
| Q |
594 |
tttaattcagttggagagagaattcaatcattgtgttgttgtattatacattgcatatgatttcaatatatgattt |
669 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8833770 |
tttaattcagttggagagagaattcaatcattatgttgttgtattatacattgcatatgattttaatatatgattt |
8833845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 637 - 774
Target Start/End: Original strand, 8833845 - 8833982
Alignment:
| Q |
637 |
ttatacattgcatatgatttcaatatatgatttcaatttatgaaataaatcagtagtatgtgtcactagatagaataagcaagattttcaagttacgtgt |
736 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8833845 |
ttatacattgcatatgattttaatatatgatttcaatttataaaataaatcagtagtatgtgtcactagatagaataagcaagattttcaagttacgtgt |
8833944 |
T |
|
| Q |
737 |
cactttaatatttattcacagtatattttagtttagtt |
774 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8833945 |
cactttaatatttattcacagtatattttagtttagtt |
8833982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 777 - 852
Target Start/End: Original strand, 502 - 574
Alignment:
| Q |
777 |
aactagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttggt |
852 |
Q |
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| T |
502 |
aactagggagacaacccgtgcgtt-gcacgggtttgcttaaa-ttttgtaacataaatg-aaaagaaaatgttggt |
574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 778 - 853
Target Start/End: Original strand, 47930432 - 47930504
Alignment:
| Q |
778 |
actagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttggtc |
853 |
Q |
| |
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| T |
47930432 |
actagggagacaacccgtgcgtt-gcacgggtttgctt-aaattttgtaacataaat-caaaagaaaatgttggtc |
47930504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 778 - 853
Target Start/End: Original strand, 54943232 - 54943304
Alignment:
| Q |
778 |
actagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttggtc |
853 |
Q |
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| T |
54943232 |
actagggagacaacccgtgcgtt-gcacgggtttgctt-aaattttgtaacataaat-caaaagaaaatgttggtc |
54943304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 853
Target Start/End: Original strand, 5881805 - 5881854
Alignment:
| Q |
802 |
gcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttggtc |
853 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
5881805 |
gcacgggtttgtttaaa-ttttgtaacataaatg-aaaagaaaatgttggtc |
5881854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 4805960 - 4806023
Alignment:
| Q |
377 |
aaatcaaagactccttaacatctgtaaattaaaattgttatttaaatgt-tttatatttaaaaa |
439 |
Q |
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|||| |||||||| ||||||||| |||||||||||||||||||| ||| |||||||||||||| |
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| T |
4805960 |
aaattaaagactcattaacatctataaattaaaattgttatttacgtgtctttatatttaaaaa |
4806023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 23405434 - 23405376
Alignment:
| Q |
382 |
aaagactccttaacatctgtaaattaaaattgttatttaaatgt-tttatatttaaaaa |
439 |
Q |
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| T |
23405434 |
aaagactcattgacatctataaattaaaattgttatttacgtgtctttatatttaaaaa |
23405376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 853
Target Start/End: Complemental strand, 43946505 - 43946433
Alignment:
| Q |
778 |
actagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttggtc |
853 |
Q |
| |
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||||||||||| || |||||||| ||||||||||| |||| |||| ||||||||||| ||||||||||||||||| |
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|
| T |
43946505 |
actagggagacaactcgtgcgtt-gcacgggtttgactaaattttt-taacataaatg-aaaagaaaatgttggtc |
43946433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 25275648 - 25275710
Alignment:
| Q |
377 |
aaatcaaagactccttaacatctgtaaattaaaattgttatttaaatgt-tttatatttaaaa |
438 |
Q |
| |
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|
| T |
25275648 |
aaatcaaagactcattaacatctacaaattaaaattgttttttacgtgtctttatatttaaaa |
25275710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 838
Target Start/End: Complemental strand, 16864588 - 16864551
Alignment:
| Q |
800 |
ttgcacgggtttgcttaaaattttgtaacataaatgaaa |
838 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
16864588 |
ttgcacgggtttgcttaaa-ttttgtaacataaatgaaa |
16864551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 777 - 850
Target Start/End: Complemental strand, 12834207 - 12834137
Alignment:
| Q |
777 |
aactagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttg |
850 |
Q |
| |
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|||||||||||| || |||| ||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||| |
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| T |
12834207 |
aactagggagacaacccgtgtgtt-gcacgggtttgattaaattttt-taacataaatg-aaaagaaaatgttg |
12834137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 777 - 850
Target Start/End: Complemental strand, 12866185 - 12866115
Alignment:
| Q |
777 |
aactagggagaccacacgtgcgtttgcacgggtttgcttaaaattttgtaacataaatgaaaaagaaaatgttg |
850 |
Q |
| |
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|||||||||||| || |||| ||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||| |
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| T |
12866185 |
aactagggagacaacccgtgtgtt-gcacgggtttgattaaattttt-taacataaatg-aaaagaaaatgttg |
12866115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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