View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271-7-Insertion-2 (Length: 670)

Name: NF1271-7-Insertion-2
Description: NF1271-7
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271-7-Insertion-2
NF1271-7-Insertion-2
[»] chr1 (10 HSPs)
chr1 (19-364)||(44614377-44614721)
chr1 (159-364)||(44793848-44794053)
chr1 (12-152)||(17809928-17810067)
chr1 (484-552)||(44614765-44614833)
chr1 (484-552)||(44789881-44789949)
chr1 (484-552)||(44793736-44793804)
chr1 (64-143)||(44783964-44784043)
chr1 (19-142)||(35900812-35900934)
chr1 (335-394)||(44783642-44783701)
chr1 (247-340)||(11542486-11542579)
[»] chr5 (3 HSPs)
chr5 (237-483)||(29505387-29505639)
chr5 (484-552)||(29505260-29505328)
chr5 (65-140)||(29505800-29505875)
[»] scaffold0017 (3 HSPs)
scaffold0017 (19-137)||(182333-182450)
scaffold0017 (237-337)||(171525-171625)
scaffold0017 (19-136)||(171246-171362)
[»] scaffold0061 (2 HSPs)
scaffold0061 (237-337)||(27167-27267)
scaffold0061 (19-136)||(27430-27546)
[»] chr3 (1 HSPs)
chr3 (19-140)||(26729991-26730111)
[»] chr2 (2 HSPs)
chr2 (64-140)||(29218246-29218322)
chr2 (64-140)||(29331545-29331621)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 44614377 - 44614721
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    |||||||||||||||||||||||||||| | |||||||       |||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  44614377 ggattcttcactggtttcgttggcttgg-tcggctcaatgttgttactaccatcttggagagaaacttactccagattcttgaacactttgatattgaaa 44614475  T
Q  119 gtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614476 gtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaat 44614575  T
Q  219 attaaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaata 318  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614576 attgaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaata 44614675  T
Q  319 tcaatctcataatatatatcattgttgttttcatagttaagttaat 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  44614676 tcaatctcataatatatatcattgttgttttcatagttaagttaat 44614721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 44794053 - 44793848
Alignment:
Q  159 tacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaa 258  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44794053 tacttatatttctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaa 44793954  T
Q  259 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcatagttaa 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44793953 gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcatagttaa 44793854  T
Q  359 gttaat 364  Q
    ||||||    
T  44793853 gttaat 44793848  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 17810067 - 17809928
Alignment:
Q  12 ggggtttggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgat 111  Q
    |||| |||| ||||| ||||||||||||||||||| |||||||||       |||||||||||||||||| || ||||||||||||||||||||||||||    
T  17810067 ggggcttgggttctttactggtttcgttggcttgg-taggctcaatattgttactaccgtcttggagagatacttactccagattcttgaacactttgat 17809969  T
Q  112 attgaaagtcatcatgtggtggaagcagtaattctacctgg 152  Q
    |||||||||| ||| |||||||||||||| | |||||||||    
T  17809968 attgaaagtcttcacgtggtggaagcagtgaatctacctgg 17809928  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 484 - 552
Target Start/End: Original strand, 44614765 - 44614833
Alignment:
Q  484 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaat 552  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44614765 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaat 44614833  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 484 - 552
Target Start/End: Complemental strand, 44789949 - 44789881
Alignment:
Q  484 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaat 552  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44789949 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaat 44789881  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 484 - 552
Target Start/End: Complemental strand, 44793804 - 44793736
Alignment:
Q  484 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaat 552  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44793804 ggttagcagtgtggagttcacacccttgactgtttggttatgggtaggaatagcaaaggatcaataaat 44793736  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 44784043 - 44783964
Alignment:
Q  64 actaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaat 143  Q
    |||||| |||||||||||||| ||||||| ||||||||| ||||| ||||||| | ||||||| ||||||||||||||||    
T  44784043 actaccatcttggagagaaacctactccaaattcttgaatactttaatattgagaatcatcatctggtggaagcagtaat 44783964  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 35900812 - 35900934
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    |||||||||| ||| |||||||||||||  ||||||||       |||||| |||||||||||||| | ||||| |||||||||||| ||||||||||||    
T  35900812 ggattcttcattggcttcgttggcttggc-aggctcaatatttttactaccatcttggagagaaacttgctccaaattcttgaacacattgatattgaaa 35900910  T
Q  119 gtcatcatgtggtggaagcagtaa 142  Q
     || || ||||| |||||||||||    
T  35900911 atcttcttgtggaggaagcagtaa 35900934  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 44783701 - 44783642
Alignment:
Q  335 tatcattgttgttttcatagttaagttaatatgtacatatcacaagtcatgattaaatta 394  Q
    |||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||    
T  44783701 tatcattgttgttttcatagttaagttaatttatacatatcacatgtcttgattaaatta 44783642  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 11542579 - 11542486
Alignment:
Q  247 tgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcat 340  Q
    ||||||||||||||| ||| | |||||||||||||||||||| || |||||||  |  ||| |||||||||||||||| |||||  ||||||||    
T  11542579 tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatcccataacctatatcat 11542486  T

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Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 237 - 483
Target Start/End: Complemental strand, 29505639 - 29505387
Alignment:
Q  237 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 336  Q
    ||||||||||||||||||||||   |||||| |||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||||||||| |    
T  29505639 tgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcataatataca 29505540  T
Q  337 tcattgttgttttcatagttaagttaatatgtacatatcacaagtcatgattaaa-------ttacttgtttgtaaggttttttcatgtactaaaactgc 429  Q
    |||| || ||||||||||| |||||||| | ||||||||||| ||| |||| |||       |||||||| | | | |||||||| |||||||||| |||    
T  29505539 tcatcgtagttttcatagtcaagttaatctatacatatcacatgtcctgatcaaatgattagttacttgtgt-ttatgttttttcttgtactaaaattgc 29505441  T
Q  430 actgatttggtgatgtttccaaatactaaaactaattcttatttttgcaggatc 483  Q
    ||||||||  |||  ||| ||| |||||||| ||||||||||||||||||||||    
T  29505440 actgattttatgacattttcaagtactaaaattaattcttatttttgcaggatc 29505387  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 484 - 552
Target Start/End: Complemental strand, 29505328 - 29505260
Alignment:
Q  484 ggttagcagtgtggagttcacacccttgactgtctggttatgggtaggaatagcaaaggatcaataaat 552  Q
    ||||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||| |||||||    
T  29505328 ggttagcagtgtggagttcacactcttgactgtttggttaagagtaggaataggaaaggatgaataaat 29505260  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 29505875 - 29505800
Alignment:
Q  65 ctaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 140  Q
    ||||| |||||||||||||| || |||| |||||||||  ||||||||||||||||  ||||||||||||||||||    
T  29505875 ctaccatcttggagagaaacctattccaaattcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt 29505800  T

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Target: scaffold0017 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 182333 - 182450
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    |||||||||||||||||| ||||||||| |||||||||       |||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  182333 ggattcttcactggtttcattggcttgg-taggctcaatattgttactaccatcttggagagaaacttactccagattcttgaacactttgatattgaaa 182431  T
Q  119 gtcatcatgtggtggaagc 137  Q
    |||||||||||||||||||    
T  182432 gtcatcatgtggtggaagc 182450  T

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Target: scaffold0017; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 171525 - 171625
Alignment:
Q  237 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 336  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  171525 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatata 171624  T
Q  337 t 337  Q
    |    
T  171625 t 171625  T

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Target: scaffold0017; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 171246 - 171362
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    ||||||||||||||||||||||| |||| |||||||||       |||||| |||||||||||||| ||||||| ||||||||| |||||  |||||| |    
T  171246 ggattcttcactggtttcgttggtttgg-taggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatactttactattgaga 171344  T
Q  119 gtcatcatgtggtggaag 136  Q
     |  ||||||||||||||    
T  171345 attttcatgtggtggaag 171362  T

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Target: scaffold0061 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 27267 - 27167
Alignment:
Q  237 tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatata 336  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  27267 tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatata 27168  T
Q  337 t 337  Q
    |    
T  27167 t 27167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 27546 - 27430
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    ||||||||||||||||||||||| |||| |||||||||       |||||| |||||||||||||| ||||||| ||||||||| |||||  |||||| |    
T  27546 ggattcttcactggtttcgttggtttgg-taggctcaatattgttactaccatcttggagagaaacctactccaaattcttgaatactttactattgaga 27448  T
Q  119 gtcatcatgtggtggaag 136  Q
     |  ||||||||||||||    
T  27447 attttcatgtggtggaag 27430  T

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Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 26729991 - 26730111
Alignment:
Q  19 ggattcttcactggtttcgttggcttgggtaggctcaannnnnnnactaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaa 118  Q
    |||||||||||| ||||||||||||||| |||||||||       | || |||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  26729991 ggattcttcactagtttcgttggcttgg-taggctcaataatgttaatatcgtcttggagagaaacttactccagattcttgaacaccttgatcttgaaa 26730089  T
Q  119 gtcatcatgtggtggaagcagt 140  Q
    | | ||||||||||||||||||    
T  26730090 gccttcatgtggtggaagcagt 26730111  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 29218322 - 29218246
Alignment:
Q  64 actaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 140  Q
    |||||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29218322 actaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29218246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 29331621 - 29331545
Alignment:
Q  64 actaccgtcttggagagaaacgtactccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt 140  Q
    |||||||||||||| |||||| ||||||| |||||||||  |  | ||||||| | |||||||||| ||||||||||    
T  29331621 actaccgtcttggaaagaaacctactccaaattcttgaatgcgataatattgagaatcatcatgtgctggaagcagt 29331545  T

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