View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-7-Insertion-4 (Length: 415)
Name: NF1271-7-Insertion-4
Description: NF1271-7
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-7-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 415
Target Start/End: Original strand, 26494109 - 26494519
Alignment:
| Q |
5 |
acacgccattttttgcttactattttccatgtgtttcgggggaaaatgtggatagtaggaaaattgaaaaaataaaagacatccagcgacgtttgatttt |
104 |
Q |
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| T |
26494109 |
acacgccattttttgcttactattttccatgtgtttcgggg-aaaatgtggatagtaggaaaattgaaaaaataaaagacatccagagacgtttgatttt |
26494207 |
T |
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| Q |
105 |
gagctctggacggttgggtgctctaaacttcttcccgaaaattgtatctcgcgtgttgtttagaaaacgttggcaagaatttacgcaacttcggaagttg |
204 |
Q |
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| T |
26494208 |
gagctccggacagttgggtgctctaaatttcttcccgaaaattgtatctcgcgtgttgtttagaaaacgttggcaagaatttacgcaacttcggaagttg |
26494307 |
T |
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| Q |
205 |
caaaatgatttgttggttgaactaatacaagccagaaagaaagttattgnnnnnnntaacgatgatgatgaatatgttatttgttatgtggatactttgt |
304 |
Q |
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| T |
26494308 |
caaaatgatttgttggttgaactaatacaagccagaaagaaagttattgaaaaaaataacgatgatgatgaatatgttgtttgttatgtggatactttgt |
26494407 |
T |
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| Q |
305 |
tgaatttgcggttacgtgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccgcaggaactgaca-aacttcaac |
403 |
Q |
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| T |
26494408 |
tgaatttgcggttacctgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccgcaggaactgacacaacttcaac |
26494507 |
T |
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| Q |
404 |
tacactagagtg |
415 |
Q |
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| T |
26494508 |
tacactagagtg |
26494519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 415
Target Start/End: Original strand, 26506431 - 26506564
Alignment:
| Q |
283 |
atttgttatgtggatactttgttgaatttgcggttacgtgaggagaaacggaagcttaacgaaggtgaagttgttgcactatgttccgagtttctcaccg |
382 |
Q |
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| T |
26506431 |
atttgttacgtcgatactttgttgaatttggagttgcctgaggagaaacgaaagcttgatgacgatgagcttgttgcgctgtgttcggagtttctcactg |
26506530 |
T |
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| Q |
383 |
caggaactgaca-aacttcaactacactagagtg |
415 |
Q |
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| T |
26506531 |
ccggaacagatacaacttcaactgcattagagtg |
26506564 |
T |
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