View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-7-Insertion-5 (Length: 275)
Name: NF1271-7-Insertion-5
Description: NF1271-7
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-7-Insertion-5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 14771850 - 14772116
Alignment:
| Q |
9 |
cttttgcactgtttagactttgaatttttgagtgatgttattgcctgtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcc |
108 |
Q |
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| T |
14771850 |
cttttgcactgtttagattttgaatttttgagtgatgttattgtctgtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcc |
14771949 |
T |
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| Q |
109 |
caatcgtcacggcaactccaactgcaatacaggtgtataatggattcagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaa |
208 |
Q |
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| T |
14771950 |
caatcgtcatggcaactccaactgcaatacaggtgtataatggattaagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaa |
14772049 |
T |
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| Q |
209 |
cgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcgacctatgag |
275 |
Q |
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| T |
14772050 |
cgaacaattaacaagttaacctggaaaatgatatacctgaagcatacataagagatcgacctatgag |
14772116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 17878747 - 17878844
Alignment:
| Q |
168 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatc |
265 |
Q |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatc |
17878844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 15014113 - 15014234
Alignment:
| Q |
156 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
253 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
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| Q |
254 |
acttaagagatcgacctatgag |
275 |
Q |
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| T |
15014213 |
acataagagatcgatctatgag |
15014234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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