View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-7-Insertion-6 (Length: 161)
Name: NF1271-7-Insertion-6
Description: NF1271-7
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-7-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 1e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 35676376 - 35676526
Alignment:
| Q |
8 |
agaggaagatatgagaagaagaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaa |
107 |
Q |
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| T |
35676376 |
agaggaagatatgagaa---gaaccataaacatcgaccaagtgatatatcacgaagagattggtttttatcatctgcactcaatagaaaccaaagcttaa |
35676472 |
T |
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| Q |
108 |
gccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattc |
161 |
Q |
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| T |
35676473 |
gccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattc |
35676526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 35655383 - 35655458
Alignment:
| Q |
86 |
ctcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattc |
161 |
Q |
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| T |
35655383 |
ctcaacagaaaccaaaggttaagccatgtccacctttctacacagttctctttcacaggaaatcttctcttcattc |
35655458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 35645953 - 35646030
Alignment:
| Q |
84 |
cactcaatagaaaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattc |
161 |
Q |
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| T |
35645953 |
cactcaacaaaaaccaaagcttaagccatgtccaccattctgccaagttctctttcacatgaaatcttctcttcattc |
35646030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 35672949 - 35673001
Alignment:
| Q |
95 |
aaccaaagcttaagccatgtccacatttctacaaagttttctttcacatgaaa |
147 |
Q |
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| T |
35672949 |
aaccaaaggttaagccatgtccacctttctacaaaattctctttcgcatgaaa |
35673001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 4203 - 4265
Alignment:
| Q |
99 |
aaagcttaagccatgtccacatttctacaaagttttctttcacatgaaatcttctcttcattc |
161 |
Q |
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| T |
4203 |
aaagcttaagccatgtccacctttctacaatgttctctttcgcatgaaagcttctattcattc |
4265 |
T |
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