View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-1 (Length: 162)
Name: NF1271-Insertion-1
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 5e-48
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 42992072 - 42991922
Alignment:
| Q |
12 |
gttcttccacaacaaagccgataacattgcttaaaaacaaaattgcagctnnnnnnnttgcttaaagagcttaaccatattttttaacgagccttgtaat |
111 |
Q |
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| T |
42992072 |
gttcttccacaacaaagccgataacattgcttaaaaacaaaattgcagctaaaaaaattgcttaaatagcttaaccatattttttaacgagccttgtaat |
42991973 |
T |
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| Q |
112 |
taacgnnnnnnnttcaatgaagccctaagaacattatacgactatattgca |
162 |
Q |
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| T |
42991972 |
taacgaaaaaaattcgatgaagccctaagaacattatacggctatattgca |
42991922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 8e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 37731331 - 37731176
Alignment:
| Q |
8 |
cactgttcttccacaacaaagccgataacattgcttaaaaacaaaattgcagctnnnnnnnttgcttaaagagcttaaccatattttttaacgagccttg |
107 |
Q |
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| T |
37731331 |
cactgttcttccacaacaaagccgataacattgcttaaaaacaaaattacagctaaaaaaattgcttaaagagcttaaccatattttttaacgagccttg |
37731232 |
T |
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| Q |
108 |
taattaacg-nnnnnnnttcaatgaagccctaagaacattatacgactatattgca |
162 |
Q |
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| T |
37731231 |
taattaacgaaaaaaaattcgatgaagctctaagaacattatacggctatattgca |
37731176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 20688713 - 20688757
Alignment:
| Q |
73 |
ttaaagagcttaaccatatttttt-aacgagccttgtaattaacg |
116 |
Q |
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| T |
20688713 |
ttaaagagcttaaccattttttttaaacgagccttttaattaacg |
20688757 |
T |
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