View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-12 (Length: 318)
Name: NF1271-Insertion-12
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 45141919 - 45141609
Alignment:
| Q |
8 |
gaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataac |
107 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
45141919 |
gaattgactctaattccgtaagctccaagctcaccacacgttgaacgtacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttc |
45141820 |
T |
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| Q |
108 |
cagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatcc |
207 |
Q |
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| T |
45141819 |
cagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatcc |
45141720 |
T |
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| Q |
208 |
acgaacrttaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatg |
307 |
Q |
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| T |
45141719 |
acgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatg |
45141620 |
T |
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| Q |
308 |
tctagggttcc |
318 |
Q |
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||||||||||| |
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| T |
45141619 |
tctagggttcc |
45141609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 45152564 - 45152252
Alignment:
| Q |
8 |
gaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataac |
107 |
Q |
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| T |
45152564 |
gaattaactcttattccataagctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtttggatgttgtataatcatgtcctgcacatc |
45152465 |
T |
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| Q |
108 |
cagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatcc |
207 |
Q |
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| T |
45152464 |
cagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttgtagctgatcc |
45152365 |
T |
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| Q |
208 |
acgaacrttaatggccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagaca------taccaccttcaattccagcgttgctaaac |
301 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||| |||||||||| |||||| || ||||| |||||||||| ||||| ||| |
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| T |
45152364 |
acgaacattaatggccatggtgttgtcaaattcatttacatca----ttagtatgctgatagacatagcagtagcacctccaattccagcattgctgaac |
45152269 |
T |
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| Q |
302 |
ataatgtctagggttcc |
318 |
Q |
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| T |
45152268 |
atgatgtctaaggttcc |
45152252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 38256383 - 38256127
Alignment:
| Q |
8 |
gaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataac |
107 |
Q |
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||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |||| ||||||||||| || | ||||||||| || | | | |
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| T |
38256383 |
gaattgactctgattccataagctccaagctcaccgcatgctgacctaacaaggcctataagaccatgttttgatgctgtataatcatgtcctgcacatc |
38256284 |
T |
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| Q |
108 |
cagcaacagaggcagctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatcc |
207 |
Q |
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| ||||| | ||||||||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| |||||||||| ||| || || |
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| T |
38256283 |
taccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttgatagttgcagctgcacc |
38256184 |
T |
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| Q |
208 |
acgaacrttaatggccatggtgttgtcaaattcattcagatcaaattctagtatgct |
264 |
Q |
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| T |
38256183 |
acgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtatgct |
38256127 |
T |
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