View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271-Insertion-14 (Length: 479)

Name: NF1271-Insertion-14
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271-Insertion-14
NF1271-Insertion-14
[»] chr1 (8 HSPs)
chr1 (7-479)||(34824801-34825268)
chr1 (131-442)||(49458200-49458510)
chr1 (131-447)||(3545456-3545771)
chr1 (135-442)||(1248946-1249250)
chr1 (25-110)||(34821506-34821591)
chr1 (247-328)||(38204340-38204421)
chr1 (250-442)||(13868175-13868366)
chr1 (251-299)||(33575868-33575916)
[»] scaffold0555 (1 HSPs)
scaffold0555 (131-447)||(7138-7453)
[»] chr2 (8 HSPs)
chr2 (131-447)||(17689468-17689783)
chr2 (248-355)||(6823001-6823108)
chr2 (247-309)||(7300264-7300326)
chr2 (374-442)||(32624072-32624139)
chr2 (365-439)||(19469250-19469323)
chr2 (250-328)||(31265814-31265892)
chr2 (374-442)||(144384-144451)
chr2 (247-299)||(9005423-9005475)
[»] chr8 (7 HSPs)
chr8 (131-442)||(6985098-6985407)
chr8 (131-447)||(3938684-3939000)
chr8 (131-232)||(40822295-40822396)
chr8 (375-439)||(39432465-39432528)
chr8 (247-282)||(15438755-15438790)
chr8 (247-282)||(15530059-15530094)
chr8 (365-439)||(25192793-25192866)
[»] chr3 (13 HSPs)
chr3 (131-447)||(31674399-31674715)
chr3 (131-447)||(11237275-11237591)
chr3 (206-447)||(31921705-31921945)
chr3 (131-228)||(29830923-29831020)
chr3 (247-355)||(46249303-46249411)
chr3 (368-442)||(20857663-20857736)
chr3 (373-442)||(20857940-20858008)
chr3 (133-182)||(52735042-52735091)
chr3 (247-303)||(4963950-4964006)
chr3 (247-303)||(35216399-35216455)
chr3 (247-308)||(21399969-21400030)
chr3 (247-303)||(14306858-14306914)
chr3 (374-442)||(40514066-40514133)
[»] chr6 (9 HSPs)
chr6 (131-447)||(2364575-2364890)
chr6 (131-447)||(22531988-22532302)
chr6 (269-447)||(2710069-2710246)
chr6 (247-303)||(6936978-6937034)
chr6 (247-338)||(31706357-31706448)
chr6 (137-190)||(2710324-2710375)
chr6 (247-309)||(33095557-33095619)
chr6 (374-439)||(26513437-26513501)
chr6 (131-190)||(22626135-22626192)
[»] chr5 (6 HSPs)
chr5 (131-447)||(475683-475998)
chr5 (247-303)||(27679695-27679751)
chr5 (250-330)||(5909534-5909614)
chr5 (271-338)||(34373088-34373155)
chr5 (374-442)||(5099997-5100064)
chr5 (247-283)||(17431098-17431134)
[»] chr4 (9 HSPs)
chr4 (131-226)||(6874654-6874749)
chr4 (374-442)||(20543798-20543865)
chr4 (247-337)||(56337962-56338052)
chr4 (269-338)||(40483771-40483840)
chr4 (250-303)||(48029239-48029292)
chr4 (250-303)||(53569598-53569651)
chr4 (247-303)||(9690008-9690064)
chr4 (247-303)||(32348806-32348862)
chr4 (368-442)||(43517090-43517163)
[»] chr7 (7 HSPs)
chr7 (247-355)||(27724550-27724658)
chr7 (247-329)||(30802246-30802328)
chr7 (248-303)||(19512005-19512060)
chr7 (247-299)||(7319813-7319865)
chr7 (259-303)||(8753886-8753930)
chr7 (374-442)||(26855426-26855493)
chr7 (247-299)||(33822024-33822076)
[»] scaffold0246 (1 HSPs)
scaffold0246 (269-338)||(21710-21779)
[»] scaffold0048 (1 HSPs)
scaffold0048 (253-338)||(64212-64297)
[»] scaffold0321 (1 HSPs)
scaffold0321 (247-303)||(17672-17728)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 479
Target Start/End: Complemental strand, 34825268 - 34824801
Alignment:
Q  7 agatagtgtcgtttagtgctaccatcacatgcattctcaaaaaggctcaatatatgtccttgaaatattgaaataaatgaatatgaaatgtaatattata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34825268 agatagtgtcgtttagtgctaccatcacatgcattctcaaaaaggctcaacatatgtccttgaaatattgaaataaatgaatatgaaatgtaatattata 34825169  T
Q  107 gagtaattaggnnnnnnnnnnnnwagaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctga 206  Q
    || ||||||||             ||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  34825168 gaataattaggttttttttt---aagaaacaaaaatgatatatattaacaaag-cggtgaagcctcctaaatacaagatgtactaagaagtcagtcctga 34825073  T
Q  207 aagagtcaaacgaatgtagtaattacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgt 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34825072 aagagtcaaacaaatgtagtaattacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccaaccaccacctttgataaccgtacacaaatgt 34824973  T
Q  307 ggctttactaacttttagccaccataaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgt 406  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34824972 ggctttactaacttttagccaccataaagaatgtaattttactttttctgataaaccttcaatggatgtttgaatattattaaaaagtctgttgttgcgt 34824873  T
Q  407 tcatttcaaaccatcccacacacatagtaaccaaatgagctatagagtaattagtttgatctattcggtaaat 479  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824872 tcattccaaaccat-ccacacacatagtaaccaaatgagctatagagtaattagtttgatctattcggtaaat 34824801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 131 - 442
Target Start/End: Original strand, 49458200 - 49458510
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||  ||||||||||||    
T  49458200 agaaacaaaaatggtatatattaacaaaggcggtgaagcctcctaaatacaagatgtactaagaagtcacccctgcaagagtcaaataaatgtagtaatt 49458299  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49458300 acaataaatcggatgcgtcgatacccaaacaatgcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactagcttttagccacca 49458399  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  49458400 taaagaatataattttactttttctgataaaccttcaatgaatgtttggatattattaaaaagtcatttgttgcgttcatttcaaaccat-ccacacaca 49458498  T
Q  431 tagtaaccaaat 442  Q
     || ||||||||    
T  49458499 aagcaaccaaat 49458510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 131 - 447
Target Start/End: Complemental strand, 3545771 - 3545456
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||||| ||| |||||||||||| ||||||||||||    
T  3545771 agaaacaaaaatggtatatattaacaaagacggtaaaacctcctaagtataagatatattaagaagtcacccctcaaagagtcaaacaaatgtagtaatt 3545672  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||| || | |||||||||||||||| |||||||||||||    
T  3545671 acaataaaccgggtgcgtcgatacctaaacaaagcataggatccgaccaccacctttgagaaccttatataaatgtggctttactagcttttagccacca 3545572  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| |||||    
T  3545571 taaagagtgtaattttactttttctgataagccttcaatggatgtttgggtattattaaaaagtttgttgttgctttcatttcaaaccat-ccatacaca 3545473  T
Q  431 tagtaaccaaatgagct 447  Q
     ||||||||||||||||    
T  3545472 aagtaaccaaatgagct 3545456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 135 - 442
Target Start/End: Complemental strand, 1249250 - 1248946
Alignment:
Q  135 acaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaattacaa 234  Q
    ||||||||||||||||||||||||| |   |||||||||| ||||||||||||||||||| ||||| ||| ||| ||||| ||  ||  |||||||||||    
T  1249250 acaaaaatggtatatattaacaaaggcctcgaagcctccttagtacaagatgtactaagaggtcacccctcaaacagtcatacagatacagtaattacaa 1249151  T
Q  235 taaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaa 334  Q
     |||  || |  ||||||||||||||| | || |||||||| ||||||||||||| | ||||||||||||||| | |||||| |||||||||||||||||    
T  1249150 -aaacaggatcagtcgatacccaaacataacagagggtccggccaccacctttgagagccgtacacaaatgtgccattactagcttttagccaccataaa 1249052  T
Q  335 gaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagt 434  Q
    |||| ||| |||  ||||| | ||||| |||| ||||| |||||||| ||||||||| || |||||||||||||||| |||| ||| ||||||||| |||    
T  1249051 gaatgtaa-tttaatttttgtaataaatcttcgatggaggtttggatgttattaaaatgtttgttgttgcgttcattccaaatcat-ccacacacaaagt 1248954  T
Q  435 aaccaaat 442  Q
    ||||||||    
T  1248953 aaccaaat 1248946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 34821506 - 34821591
Alignment:
Q  25 ctaccatcacatgcattctcaaaaaggctcaatatatgtccttgaaatattgaaataaatgaatatgaaatgtaatattatagagt 110  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  34821506 ctaccatcacatgcattctcaaaaaggctcaacatatgtccttgaaatattgaaataactgaatttgaaatgtaatattatagagt 34821591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 38204421 - 38204340
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccac 328  Q
    ||||||||||||||||| || ||||||||||||||| |||||  |  ||||||||||||| || ||| || |||||||||||    
T  38204421 gtcgatacccaaacaaatcaaagggtccgaccaccatctttgcgagtcgtacacaaatgtagcattattagcttttagccac 38204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 442
Target Start/End: Complemental strand, 13868366 - 13868175
Alignment:
Q  250 gatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatataatttttct 349  Q
    |||||||||||| |  | ||||||||||||||| |||||   |||||||| |||  |||| ||| || ||||||||||||| ||||| |   ||||  ||    
T  13868366 gatacccaaacataataaagggtccgaccaccatctttgtgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgatatttaact 13868267  T
Q  350 ttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||| |  ||    ||| |||| |||||||||||||||| ||||||| || || |||||||| |||||||  ||| |||||||||||||||||    
T  13868266 ttttttactagttgttccatggttgtttggatattattataaagtctattattacgttcattccaaacca-accaaacacatagtaaccaaat 13868175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 33575868 - 33575916
Alignment:
Q  251 atacccaaacaaagcatagggtccgaccaccacctttgataaccgtaca 299  Q
    |||||||||||||||||||||| ||||||||| || | | |||||||||    
T  33575868 atacccaaacaaagcatagggttcgaccaccatctataagaaccgtaca 33575916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 7138 - 7453
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  7138 agaaacaaaaatggtatatattaacaaaggcggtgaagcctcctaagtccaagatgtattaagaagtcacccctgaaagagttaaacaaatgtagtaatt 7237  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  7238 acaaaaaatcgggtgcttcgatacccaaacaaagcatagggttcgaccaccacctttgataaccgtacacaaatgtggctttactaggttttagccacca 7337  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||||| |||| || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  7338 taaagaatgtaatcttacttttcctgataaaccttcaattgatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacaca 7436  T
Q  431 tagtaaccaaatgagct 447  Q
    |||||||||||||||||    
T  7437 tagtaaccaaatgagct 7453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 17689468 - 17689783
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  17689468 agaaacaaaaatggtatatattaacaaaggcggtaaaacctcctaagtacaagatgtactaagaagtcacccctcaaagagtcaaacaaatgtagtaatt 17689567  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  17689568 acaataaaccgggtgcgtcgatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccacca 17689667  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  17689668 taaagagtgtaattttactttttctgataagccttcaatggatgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacaca 17689766  T
Q  431 tagtaaccaaatgagct 447  Q
     ||||||||||||||||    
T  17689767 aagtaaccaaatgagct 17689783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 6823001 - 6823108
Alignment:
Q  248 tcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatataattttt 347  Q
    ||||||||||||||||| | ||||| ||||||||| |||||| |||||||||||||  |||  ||| || |||||| ||||||||| ||||   |||||     
T  6823001 tcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaatgatattttg 6823100  T
Q  348 ctttttct 355  Q
    ||||||||    
T  6823101 ctttttct 6823108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 7300264 - 7300326
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggc 309  Q
    ||||||||||||||| | || ||||||||||||||| |||||| ||||| ||||||| |||||    
T  7300264 gtcgatacccaaacataacaaagggtccgaccaccatctttgacaaccgcacacaaacgtggc 7300326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 442
Target Start/End: Original strand, 32624072 - 32624139
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    ||||||||||||||||||||||| || || ||||| || ||||||| |||| ||||| |||||||||||    
T  32624072 gtttggatattattaaaaagtctattattacgttcgttccaaacca-cccaaacacaaagtaaccaaat 32624139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 19469323 - 19469250
Alignment:
Q  365 tcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaacca 439  Q
    |||||||  ||||||||||||||||| | ||| |||||||||||||| ||||| | |||| ||||| ||||||||    
T  19469323 tcaatggtagtttggatattattaaatattctattgttgcgttcattccaaacta-cccagacacagagtaacca 19469250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 31265814 - 31265892
Alignment:
Q  250 gatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccac 328  Q
    ||||||||||||||| | ||||||||||||||| |||||| || | |||||||| ||||  |||  | |||||||||||    
T  31265814 gatacccaaacaaagtaaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttttagccac 31265892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 144451 - 144384
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||||||||||||||||||| || || || ||||| || ||||||| |||| ||||| |||||||||||    
T  144451 gtttggatattattaaaaagcctattattacgttcgttccaaacca-cccaaacacaaagtaaccaaat 144384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 9005423 - 9005475
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtaca 299  Q
    ||||||||| ||||| |||||||||||||||||||| || ||| | |||||||    
T  9005423 gtcgatacctaaacatagcatagggtccgaccaccaactctgagatccgtaca 9005475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 131 - 442
Target Start/End: Complemental strand, 6985407 - 6985098
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  6985407 agaaacaaaaatggtatatattaacaaaggcggtgaagtctc-taagtacaagatgtactaagaagtcacccctgcaagagtcaaacaaatgtagtaatt 6985309  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  6985308 acaatacaccgggtgcgtcgatacccaaacaaagcatagggtccgaccaccatctttgataaccgtacacaaatgtggctttactagcttttagccacca 6985209  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  6985208 taaagaatgtaattttacttgttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacaca 6985110  T
Q  431 tagtaaccaaat 442  Q
     ||||| |||||    
T  6985109 aagtaatcaaat 6985098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 3938684 - 3939000
Alignment:
Q  131 agaaacaaaaatggtata--tattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaa 228  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||| || ||||||||||    
T  3938684 agaaacaaaaatggtatatatattaacaaaggcggtgaagcctcctaagtacaagatgtactaagaagtcacccgtgaaacagtcatacaaatgtagtaa 3938783  T
Q  229 ttacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccac 328  Q
    |||||||||| ||||| ||||||||  |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  3938784 ttacaataaaccgggtacgtcgatattcaaacataacatagggtccgaccaccacctttgataaccttacacaaatgtggctttactagctttt-gccac 3938882  T
Q  329 cataaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacaca 428  Q
    |||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||  ||| ||||| || ||| |||    
T  3938883 cataaagaatgtaattttactttttctgataaaccttctatgcatgtttggatattattaaaaagtatgttgttgcgtctattccaaacgat-ccaaaca 3938981  T
Q  429 catagtaaccaaatgagct 447  Q
    || || |||||||| ||||    
T  3938982 caaagcaaccaaataagct 3939000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 40822396 - 40822295
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| || ||||||||||| ||| |||||||||||| |||||| |||||    
T  40822396 agaaacaaaaatagtatatattaacaaaggcggtgaaacctcctaagtacaagatatattaagaagtcaccccttaaagagtcaaacaaatgtaataatt 40822297  T
Q  231 ac 232  Q
    ||    
T  40822296 ac 40822295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 39432465 - 39432528
Alignment:
Q  375 tttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaacca 439  Q
    |||||||||||||||| | | |||||||||||||||||||||||| |||| ||||||||||||||    
T  39432465 tttggatattattaaatattatgttgttgcgttcatttcaaacca-cccagacacatagtaacca 39432528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 15438755 - 15438790
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccacca 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  15438755 gtcgatacccaaacaaagcatagggtccgaccacca 15438790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 15530059 - 15530094
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccacca 282  Q
    ||||||||||||||||||||||||||||||||||||    
T  15530059 gtcgatacccaaacaaagcatagggtccgaccacca 15530094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 25192793 - 25192866
Alignment:
Q  365 tcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaacca 439  Q
    |||||||  ||||||||||||||||| | ||| |||||||||||||| ||||| | |||| ||||| ||||||||    
T  25192793 tcaatggtagtttggatattattaaatattctattgttgcgttcattccaaacta-cccagacacaaagtaacca 25192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 31674399 - 31674715
Alignment:
Q  131 agaaacaaaaatggtatat-attaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaat 229  Q
    ||||||||||||| ||||| |||||||||| |||||||  |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  31674399 agaaacaaaaatgatatattattaacaaaggcggtgaattctcctaagtacaagatgtactaagcagtcacccctgaaagagtcaaacaaatgtagtaat 31674498  T
Q  230 tacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacc 329  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  31674499 tacaataaaccgggtgcgtcgatacccaaacaaagcatagagtccgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccacc 31674598  T
Q  330 ataaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacac 429  Q
    ||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  31674599 ataaacaatgtaattttactttttctgataaaccttcaattgatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacac 31674697  T
Q  430 atagtaaccaaatgagct 447  Q
    ||||||||||||||||||    
T  31674698 atagtaaccaaatgagct 31674715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 11237275 - 11237591
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaa-gacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaat 229  Q
    ||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||    
T  11237275 agaaacaaagatggtatatattaacaaaaggcggtgaaacctcctaagtacaagatgtattaagaagtcacccctcaaagagtcaaacaaatgtagtaat 11237374  T
Q  230 tacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacc 329  Q
    ||||||||| ||| |||||||||||| |||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  11237375 tacaataaaccggatgcgtcgatacctaaacaaagcataggatctgaccaccacctttgagaaccgtacacaaatgtgactttactagcttttagccacc 11237474  T
Q  330 ataaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacac 429  Q
    ||||||| |  |||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  11237475 ataaagagtgcaattttactttatctgataagccttcaatggatgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccat-ctacacac 11237573  T
Q  430 atagtaaccaaatgagct 447  Q
    | | ||||||||||||||    
T  11237574 aaaataaccaaatgagct 11237591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 206 - 447
Target Start/End: Complemental strand, 31921945 - 31921705
Alignment:
Q  206 aaagagtcaaacgaatgtagtaattacaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatg 305  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||     
T  31921945 aaagagtcaaacaaatgtagtaattacaataaaccgggtgcgtcgatacccaaacaaagcatagggttcgaccaccacctctgataaccgtacacaaatt 31921846  T
Q  306 tggctttactaacttttagccaccataaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcg 405  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31921845 tggctttactagcttttagccaccataaagaatgtaattttactttttctgataaaccttcaattgatgtttggatattattaaaaagtctgttgttgcg 31921746  T
Q  406 ttcatttcaaaccatcccacacacatagtaaccaaatgagct 447  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  31921745 ttcattccaaaccat-ccacacacatagtaaccaaatgagct 31921705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 29831020 - 29830923
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaa 228  Q
    ||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  29831020 agaaacaaaaatggtatatattaacaaaggcggtaaaaccttctaagtacaagatgtactaagaagtcacccctcaaagagtcaaacaaatgtagtaa 29830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 46249411 - 46249303
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatataatttt 346  Q
    |||||||||||||||||| | ||||||||||||||| |||||  |||||||||||||  |||  ||| ||||||||| ||||||||| ||||   |||||    
T  46249411 gtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaatgatatttt 46249312  T
Q  347 tctttttct 355  Q
     ||||||||    
T  46249311 gctttttct 46249303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 20857663 - 20857736
Alignment:
Q  368 atggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||| |||||||||||||||| ||||||| || || |||||||| |||||||  ||| |||||||||||||||||    
T  20857663 atggttgtttggatattattataaagtctattattacgttcattccaaacca-accagacacatagtaaccaaat 20857736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 20857940 - 20858008
Alignment:
Q  373 tgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||||||||||||||| ||||||| || || |||||||| |||||||  ||| |||||||||||||||||    
T  20857940 tgtttggatattattataaagtctattattacgttcattccaaacca-accagacacatagtaaccaaat 20858008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 52735042 - 52735091
Alignment:
Q  133 aaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaa 182  Q
    |||||||||||||||||||||||||||||||| || | | ||||||||||    
T  52735042 aaacaaaaatggtatatattaacaaagacggtaaaactttctaagtacaa 52735091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 4963950 - 4964006
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||||||||| |||||| | ||||||||||||||| || ||| |||||||||||||    
T  4963950 gtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaa 4964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 35216455 - 35216399
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||||| ||||||||||| ||||||| || |||  ||||||||||||    
T  35216455 gtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaa 35216399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 21399969 - 21400030
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtgg 308  Q
    ||||| |||||||||| | | ||||| ||||||||| |||||| ||||||||||||| ||||    
T  21399969 gtcgacacccaaacaatgtagagggttcgaccaccaactttgagaaccgtacacaaaagtgg 21400030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 14306858 - 14306914
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||||||  | ||||| ||||||||| || ||| |||||||||||||    
T  14306858 gtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaa 14306914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 40514133 - 40514066
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    ||||||||||||||| | ||||| || || |||||||| |||||||  ||| |||||||||||||||||    
T  40514133 gtttggatattattatagagtctattattacgttcattccaaacca-accaaacacatagtaaccaaat 40514066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 2364575 - 2364890
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| | |||    
T  2364575 agaaacaaaaatggtatatattaacaaaggcggtaaaacctcctaagtacaagatgtactaagaagtcacccctcaaagagtcaaacaaatgtaattatt 2364674  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  2364675 acaataaaccgggtgcgtcgatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccacca 2364774  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||| | ||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2364775 taaagagtgtaattttactttttctcataagccttcaatggatgtttgggtattattaaaaagtctgttgttgcgttcatttcaaaccat-ccacacaca 2364873  T
Q  431 tagtaaccaaatgagct 447  Q
     ||||||||||||||||    
T  2364874 aagtaaccaaatgagct 2364890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 22531988 - 22532302
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||||| |    
T  22531988 agaaacaaaaatggtatatattaacaaaggcggtgaaacctcctaagtacaagatgtactaagaagtcacccctcaa-gagtcaaacaaatgtagtaagt 22532086  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  22532087 acaataaatcgagtgcgtcgatacctaaacaaagcataggatccaaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccacca 22532186  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||| | ||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  22532187 taaagagtgtaattttactttttctaataagccttcaatggatgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacaca 22532285  T
Q  431 tagtaaccaaatgagct 447  Q
     ||||||||||||||||    
T  22532286 aagtaaccaaatgagct 22532302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 269 - 447
Target Start/End: Complemental strand, 2710246 - 2710069
Alignment:
Q  269 gggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatataatttttctttttctgataaaccttcaa 368  Q
    ||||| |||||||| ||||||||||  |||||||| ||||| |||| | |||||||||||||||| |||||  ||||| || ||||| | |     ||||    
T  2710246 gggtctgaccaccatctttgataactatacacaaacgtggccttacaagcttttagccaccataacgaataagattttactctttctaacagttgatcaa 2710147  T
Q  369 tggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaatgagct 447  Q
    |||  |||||||| ||  |||| | |||||| || |||||||| ||||||| |||| ||||| ||||||||||| ||||    
T  2710146 tgggagtttggatgttcctaaataatctgttattacgttcattccaaacca-cccaaacacaaagtaaccaaataagct 2710069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 6936978 - 6937034
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||||||||||||||| ||||||||| |||| ||| || ||| |||||||||||||    
T  6936978 gtcgatacccaaacaaatcatagggtctgaccgccatctctgagaaccgtacacaaa 6937034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 31706357 - 31706448
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaat 338  Q
    |||||||| ||||||||  | | ||||||||||||| || ||| | ||| ||||||| ||||| ||| || |||||||||||||||| ||||    
T  31706357 gtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaat 31706448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 2710375 - 2710324
Alignment:
Q  137 aaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtact 190  Q
    |||||||  |||||||||||||||||||||  || |||||||||||||||||||    
T  2710375 aaaaatgaaatatattaacaaagacggtga--ccacctaagtacaagatgtact 2710324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 33095557 - 33095619
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggc 309  Q
    ||||||||| | ||| | || ||||||||||||||| |||||| ||||||||||||| |||||    
T  33095557 gtcgatacctagacataacaaagggtccgaccaccatctttgagaaccgtacacaaaagtggc 33095619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 439
Target Start/End: Original strand, 26513437 - 26513501
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaacca 439  Q
    |||||| |||||||||||| | |||||||||| ||||| ||||||| |||| ||||| ||||||||    
T  26513437 gtttggttattattaaaaattatgttgttgcggtcattccaaacca-cccagacacaaagtaacca 26513501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 22626192 - 22626135
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtact 190  Q
    |||||||||||||  ||||||||||| ||||| |||  || |||||||||||||||||||    
T  22626192 agaaacaaaaatgaaatatattaacatagacgatga--ccacctaagtacaagatgtact 22626135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 131 - 447
Target Start/End: Original strand, 475683 - 475998
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagtaatt 230  Q
    |||||||||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||    
T  475683 agaaacaaaaatggtatatattaacaaagatggtaaaacttcctaagtacaagatgtactaagaagtcacccttcaaagagtcaaacaaatgtagtaatt 475782  T
Q  231 acaataaatcgggtgcgtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  475783 acaataaaccgggtgcgtcgatacctaaacaaagcataggatccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccacca 475882  T
Q  331 taaagaatataatttttctttttctgataaaccttcaatggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacaca 430  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  475883 taaagagtgtaattttactttttctgataagccttcaatggatgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccat-ccacacaca 475981  T
Q  431 tagtaaccaaatgagct 447  Q
     ||||||||||||||||    
T  475982 aagtaaccaaatgagct 475998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 27679751 - 27679695
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||    
T  27679751 gtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaa 27679695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 5909614 - 5909534
Alignment:
Q  250 gatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacca 330  Q
    |||||||||||||| || ||||||||||||||| || ||| || |||||||||| ||||| ||| |  |||| ||||||||    
T  5909614 gatacccaaacaaatcaaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccacca 5909534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Complemental strand, 34373155 - 34373088
Alignment:
Q  271 gtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaat 338  Q
    ||||||||| || ||||||||   ||||||||||||||| |||||| ||||||||| |||||| ||||    
T  34373155 gtccgaccatcatctttgatagttgtacacaaatgtggccttactagcttttagcctccataacgaat 34373088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 5100064 - 5099997
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||||||||||||||||||| || || || ||||| || ||||||| |||| ||||| |||||||||||    
T  5100064 gtttggatattattaaaaagcctattattacgttcgttccaaacca-cccaaacacaaagtaaccaaat 5099997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 17431098 - 17431134
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccac 283  Q
    ||||||||||||||| | |||||||||||||||||||    
T  17431098 gtcgatacccaaacataacatagggtccgaccaccac 17431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 6874749 - 6874654
Alignment:
Q  131 agaaacaaaaatggtatatattaacaaagacggtgaagcctcctaagtacaagatgtactaagaagtcactcctgaaagagtcaaacgaatgtagt 226  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| ||||||||    
T  6874749 agaaacaaaaatggtatatattaacaaaggcggtgaaacctcctaagtacaagatgtattaagaagtcacccctcaaagagtcaaacaaatgtagt 6874654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 442
Target Start/End: Original strand, 20543798 - 20543865
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    ||||||||||||||||||||||| || || |||||||| ||||||| |||| ||||| |||||||||||    
T  20543798 gtttggatattattaaaaagtctattattacgttcattccaaacca-cccaaacacaaagtaaccaaat 20543865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 56338052 - 56337962
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaa 337  Q
    ||||||||||||||||||||   ||||| ||||||| |||||| |||| || ||||| ||||| ||  || ||||||||||||| ||||||    
T  56338052 gtcgatacccaaacaaagcaaccggtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaa 56337962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 40483771 - 40483840
Alignment:
Q  269 gggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaat 338  Q
    |||||||||||||| || ||| |||||| |||||| ||||| ||| ||||||| |||||||||| |||||    
T  40483771 gggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaat 40483840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 48029239 - 48029292
Alignment:
Q  250 gatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||| || | ||||||||||||| |||||| |||||||||||||    
T  48029239 gatacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaa 48029292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 53569598 - 53569651
Alignment:
Q  250 gatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||||||||||||| | ||||||||||||||| || ||| |||||||||||||    
T  53569598 gatacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaa 53569651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 9690008 - 9690064
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||||||| | ||||| ||||||||| |||||| |||| ||||||||    
T  9690008 gtcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaa 9690064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 32348862 - 32348806
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||||||||||||||| || ||| ||||||||||| || ||| |||||||||||||    
T  32348862 gtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaa 32348806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 43517163 - 43517090
Alignment:
Q  368 atggatgtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||| |||||||||||||||| ||||||| || || |||||||| |||||||  ||| ||||| |||||||||||    
T  43517163 atggttgtttggatattattataaagtctattattacgttcattccaaacca-accaaacacaaagtaaccaaat 43517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 27724658 - 27724550
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatataatttt 346  Q
    |||||||||||||||||| | ||| ||||||||||| |||||| ||||||||| |||  |||  |||||| |||||| ||||||||| ||||   |||||    
T  27724658 gtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccaccataacgaatgatatttt 27724559  T
Q  347 tctttttct 355  Q
     ||||||||    
T  27724558 gctttttct 27724550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 30802328 - 30802246
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccacc 329  Q
    ||||||||||||||||| || ||||||||||||||  || ||| ||||||||||||| ||||| ||| || |||| |||||||    
T  30802328 gtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattagctttcagccacc 30802246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 19512005 - 19512060
Alignment:
Q  248 tcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||||  |||||||||||||||||| || ||| |||||||||||||    
T  19512005 tcgatacccaaacaattcatagggtccgaccaccatctctgagaaccgtacacaaa 19512060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 7319865 - 7319813
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtaca 299  Q
    ||||||||||||||||| |||||||||||||||||| || | | |||||||||    
T  7319865 gtcgatacccaaacaaatcatagggtccgaccaccatctataaaaaccgtaca 7319813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 8753930 - 8753886
Alignment:
Q  259 acaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    ||||| |||||||||||||||||| || ||| |||||||||||||    
T  8753930 acaaaccatagggtccgaccaccatctctgaaaaccgtacacaaa 8753886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 442
Target Start/End: Original strand, 26855426 - 26855493
Alignment:
Q  374 gtttggatattattaaaaagtctgttgttgcgttcatttcaaaccatcccacacacatagtaaccaaat 442  Q
    |||||||||||||||||||| || || || ||||| || ||||||| |||| ||||| |||||||||||    
T  26855426 gtttggatattattaaaaagcctattattacgttcgttccaaacca-cccaaacacaaagtaaccaaat 26855493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 33822076 - 33822024
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtaca 299  Q
    ||||||||||||||||| || |||||||||| |||| || ||| |||||||||    
T  33822076 gtcgatacccaaacaaatcaaagggtccgactaccatctatgagaaccgtaca 33822024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 21710 - 21779
Alignment:
Q  269 gggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaat 338  Q
    |||||||||||||| || ||| |||||| |||||| ||||| ||| ||||||| |||||||||| |||||    
T  21710 gggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaat 21779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 64297 - 64212
Alignment:
Q  253 acccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaat 338  Q
    |||||||||||| | ||| |||||||| || || ||| ||||||||||||||||||| ||| |  | || ||||||||||||||||    
T  64297 acccaaacaaagtaaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatttgccttaagccaccataaagaat 64212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 17728 - 17672
Alignment:
Q  247 gtcgatacccaaacaaagcatagggtccgaccaccacctttgataaccgtacacaaa 303  Q
    |||||||||||||||| ||| ||||||||||||||| || |||  ||||||||||||    
T  17728 gtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaa 17672  T

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