View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-15 (Length: 344)
Name: NF1271-Insertion-15
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 10194085 - 10194422
Alignment:
| Q |
7 |
aaaggtatattggattaaattacaaaattattgtttccttttgaacttagtggtgaatttccaaggttcacgatctcataattttcattattctttggaa |
106 |
Q |
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| T |
10194085 |
aaaggtatattggattaaattacaaaattattgtttccttttgaacttagtggtgaattttcaaggttcactatctcataattttcattattctttggaa |
10194184 |
T |
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| Q |
107 |
ttttgtggtgcagaaaaaccgtgcctaagtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatagctggag |
206 |
Q |
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| T |
10194185 |
ttttgtggtgcagaaaaaccgtgcctaagtggacagagcaagtgaaggtttattctggaacagcagctgaagggtctgtggaggatggtcatagctggag |
10194284 |
T |
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| Q |
207 |
aaagtatggacaaaaggatattcttggagctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgcttaatgct |
306 |
Q |
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| T |
10194285 |
aaagtatggacaaaaggatattcttggagctaagtttccaaggtaacaatcattttttacatcatctatgtttaatttgtgcaaacatatgcttaatgct |
10194384 |
T |
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| Q |
307 |
tctttaaattcatagtaaatttttgttgcttattaaag |
344 |
Q |
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| T |
10194385 |
tctttaaattcatagtaaatttttgttgcttattaaag |
10194422 |
T |
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Back To:
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 48411788 - 48411711
Alignment:
| Q |
173 |
ctgaagggtctgtggaggatggtcatagctggagaaagtatggacaaaaggatattcttggagctaagtttccaaggt |
250 |
Q |
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| T |
48411788 |
ctgaagggtctttggatgatgaatatagctggagaaaatatggtcaaaaggatattcttggagctaagttttcaaggt |
48411711 |
T |
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