View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1271-Insertion-17 (Length: 941)
Name: NF1271-Insertion-17
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1271-Insertion-17 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 12925449 - 12925874
Alignment:
| Q |
12 |
acgcataattagtaactaatcaccgaacctaatattaaactgatatttgcacattgaaaaatttcacgaacctttaaactgataaatgaacaaaaaatta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12925449 |
acgcataattagtaactaatcaccgaacctaatattaaactgatatttgcacattgaaaaatttcacaaacctttaaactgataaatgaacaaaaaatta |
12925548 |
T |
|
| Q |
112 |
ctcaactacgacgagttttcaatagcattcaacagaaaatctattcgaacattgaaaattttcaggaagctttaattcgataaattaacaaaaaattatg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12925549 |
ctcaactacgacgagttttcaatagcattcaacagaaaatctattcgaacattgaaaattttcaggaagctttaattcgataaattaacaaaaaactatg |
12925648 |
T |
|
| Q |
212 |
aaactataactaatttttagtagcgtttaacagttaattattatcctatcaattgattataaatcatgaaccgctgaaacaagggaaagagaatacgatg |
311 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12925649 |
aaactataactaattttcagtagcgtttaacagttaattattatcctatcaattgattataaatcatgaaccgctgaaacaagggaaaaagaatacgatg |
12925748 |
T |
|
| Q |
312 |
ctgagaattacacttactgaaacatcttcgttgagattttcttcagtgatctcagaaatcagcgataaatcaaccgattcttcagaaaacgaagcagatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12925749 |
ctgagaattacacttactgaaacatcttcgttgagattttcttcagtgatctcagaaatcagcgataaatcaaccgattcttcagaaaacgaagcagatg |
12925848 |
T |
|
| Q |
412 |
aagaattcacgctcctgtttgagatc |
437 |
Q |
| |
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| T |
12925849 |
aagaattcacgctcttgtttgagatc |
12925874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 524 - 861
Target Start/End: Original strand, 12925954 - 12926281
Alignment:
| Q |
524 |
tgagaagtttaggaatcggtggatgtgcgtgcctttctggatttcttcgacggaaagtttttggatcttgcggtgcgattctctgcggagcgaggtgcag |
623 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12925954 |
tgagaagtttaggaatcggtgaatgtgcgtgcctttctggatttcttcgacggaaagtcattggatcttgcggtgcgattctctgcggagcgaggtgcag |
12926053 |
T |
|
| Q |
624 |
agagtttggttggtgtttgttgctctttcatttggcgggttcaacgatttgtggatttcaatttcagctgtatttatagcccgaatgtcctggaatattg |
723 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12926054 |
agagtttggttggtgtttgttgctctttcatttggcgggttcaacgatttgtggatttcaatttcagctgtatttatagccc----------gaatattg |
12926143 |
T |
|
| Q |
724 |
tgagataataattgatttttaattcacctctaaaagaaattaattcaaacctctaaaaacgaaatttatctgtatttatttataagggaaagtaatttat |
823 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12926144 |
tgagttaataattgatttttaattcacctctaaaagaaattaattcaaacctctaaaaacgaaatttatctgtatttatttataagggaaagtaatttat |
12926243 |
T |
|
| Q |
824 |
cttctaataactacatttctgatcttcttgtcaaaaaa |
861 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |
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|
| T |
12926244 |
cttctaataactacttttctgatcttcttgtcaaaaaa |
12926281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 12925146 - 12925248
Alignment:
| Q |
143 |
acagaaaatctattcgaacattgaaaattttcaggaagctttaattcgataaattaacaaaaaattatgaaactataactaatttttagtagcgtttaac |
242 |
Q |
| |
|
||||||||| |||| | ||||||||||||||| ||||| ||||||| || ||||||| | |||| |||||||||| || |||||| ||||| |||||| |
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|
| T |
12925146 |
acagaaaatttatttgcacattgaaaattttcctgaagcgttaattctat-aattaacgacaaatcatgaaactatgacgaattttaggtagcatttaac |
12925244 |
T |
|
| Q |
243 |
agtt |
246 |
Q |
| |
|
|||| |
|
|
| T |
12925245 |
agtt |
12925248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 890 - 941
Target Start/End: Original strand, 12926314 - 12926367
Alignment:
| Q |
890 |
ggataagtatataagaa--ggaaatttactatggggtgttcatcgactcgacta |
941 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
12926314 |
ggatgagtatataagaaaaggaaatttactatggagtgttcatcgactcaacta |
12926367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 624 - 849
Target Start/End: Complemental strand, 30789739 - 30789517
Alignment:
| Q |
624 |
agagtttggttggtgtttgttgctctttcatttggcgggttcaacgatttgtggatttcaatttcagctgtatttatagcccgaatgtcctggaatattg |
723 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | || |||| |||| ||||||||||| ||||||||||||| |||||| || ||||||| |
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|
| T |
30789739 |
agagtttggttggtgtttgttgctctttcgtttggcagtttaaacgttttgctgatttcaattttgactgtatttatagctggaatgttctctaatattg |
30789640 |
T |
|
| Q |
724 |
tgagataataattgatttttaattcacctctaaaag--aaattaattcaaacctctaaaaacgaaatttatctgtatttatttataagggaaagtaattt |
821 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| |||||| |
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|
| T |
30789639 |
tgag--gataatttttttttaattcacccctaaaagaaaaattaattcaaacctctaaaaaagaaatttatcggtattttttt---agggaaactaattt |
30789545 |
T |
|
| Q |
822 |
atcttctaataactacatttctgatctt |
849 |
Q |
| |
|
||||||||| || ||| ||| ||||||| |
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| T |
30789544 |
atcttctaacaattacttttgtgatctt |
30789517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 30790051 - 30789989
Alignment:
| Q |
145 |
agaaaatctattcgaacattgaaaattttcaggaagctttaattcgataaattaacaaaaaat |
207 |
Q |
| |
|
||||||| |||| |||||||||||| |||| |||||||||||||||||||||||||| |||| |
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|
| T |
30790051 |
agaaaatttatttgaacattgaaaactttcctgaagctttaattcgataaattaacaacaaat |
30789989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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