View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1271-Insertion-3 (Length: 190)

Name: NF1271-Insertion-3
Description: NF1271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1271-Insertion-3
NF1271-Insertion-3
[»] chr2 (3 HSPs)
chr2 (8-190)||(25306560-25306741)
chr2 (112-173)||(17308534-17308595)
chr2 (111-173)||(45034996-45035058)
[»] scaffold0251 (1 HSPs)
scaffold0251 (19-166)||(6069-6217)
[»] chr6 (5 HSPs)
chr6 (55-166)||(33869124-33869237)
chr6 (55-166)||(15868270-15868383)
chr6 (96-166)||(14620432-14620502)
chr6 (102-155)||(5378615-5378668)
chr6 (115-155)||(19645593-19645633)
[»] chr5 (5 HSPs)
chr5 (45-166)||(4895937-4896059)
chr5 (45-173)||(10412123-10412251)
chr5 (96-173)||(25502234-25502312)
chr5 (87-171)||(33689780-33689863)
chr5 (117-173)||(21637366-21637422)
[»] chr1 (3 HSPs)
chr1 (100-166)||(3284427-3284493)
chr1 (102-166)||(9311956-9312020)
chr1 (106-190)||(13046332-13046413)
[»] scaffold0245 (1 HSPs)
scaffold0245 (100-171)||(11024-11095)
[»] scaffold0060 (1 HSPs)
scaffold0060 (87-173)||(9190-9276)
[»] chr8 (4 HSPs)
chr8 (45-157)||(10885403-10885517)
chr8 (88-173)||(35673509-35673594)
chr8 (107-173)||(1174945-1175012)
chr8 (100-190)||(28220464-28220553)
[»] chr3 (2 HSPs)
chr3 (55-173)||(4608878-4608997)
chr3 (104-179)||(26667214-26667288)
[»] chr4 (5 HSPs)
chr4 (102-173)||(18807584-18807656)
chr4 (104-173)||(25054147-25054217)
chr4 (100-179)||(31337741-31337821)
chr4 (107-173)||(11809972-11810039)
chr4 (102-155)||(52520484-52520537)
[»] chr7 (5 HSPs)
chr7 (100-173)||(21631452-21631526)
chr7 (103-164)||(44963050-44963110)
chr7 (100-173)||(9878369-9878442)
chr7 (102-155)||(28124883-28124936)
chr7 (102-155)||(4895467-4895520)
[»] scaffold0311 (1 HSPs)
scaffold0311 (103-146)||(14975-15018)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 25306560 - 25306741
Alignment:
Q  8 tcaatatggtttcctatgttttcatatattttaagctatttgttagttttacccccaattttatctagttactttagtatgaataaattgtaattttcat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25306560 tcaatatggtttcctatgttttcatatattttaagctatttgttagttttacccccaattttacctagttactttagtatgaataaattgtaattttcat 25306659  T
Q  108 tgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagttaattagagtgtttgag 190  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  25306660 tgtatttcaaactcaaattggtgaattttcccactttgagtttga-gggaactattagaatatagttagttagagtgtttgag 25306741  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 17308534 - 17308595
Alignment:
Q  112 tttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||    
T  17308534 tttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagaatatagt 17308595  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 45034996 - 45035058
Alignment:
Q  111 atttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||||||||||||||| ||||| || | ||||||||||||||||||||||||| ||||||    
T  45034996 atttcaaactcaaattggtgaatttccctattttgagtttgagggggactattagagtatagt 45035058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 6069 - 6217
Alignment:
Q  19 tcctatgttttcatatattttaagctatttgttagttttacccccaattttatctagttactttagtatgaataa--attgtaattttcattgtatttca 116  Q
    ||||||| |||||||| |||||||  ||||||||||||||||||||||||||  ||||| ||| |||||||||||  | |||||||| | ||||||||||    
T  6069 tcctatgctttcatatcttttaagtcatttgttagttttacccccaattttacttagtttcttcagtatgaataatcaatgtaattt-cgttgtatttca 6167  T
Q  117 aactcaaattggtaaattttcccactttgagtttgagggggactattaga 166  Q
    ||||||||||||| | ||| |||| |||||||||||||||||||||||||    
T  6168 aactcaaattggtgattttccccattttgagtttgagggggactattaga 6217  T

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Target: chr6 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 33869124 - 33869237
Alignment:
Q  55 tttacccccaattttatctagttactttagtatgaataa--attgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttga 152  Q
    ||||||||| ||||||  |||||||| ||||||||||||  |||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  33869124 tttaccccctattttacttagttactctagtatgaataatcattgtatttttcattgtttttcaaactcaaattggtgaattttcccattttgagtttga 33869223  T
Q  153 gggggactattaga 166  Q
    ||||||||||||||    
T  33869224 gggggactattaga 33869237  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 15868270 - 15868383
Alignment:
Q  55 tttacccccaattttatctagttactttagtatgaataa--attgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttga 152  Q
    ||||||||| | ||||  |||||||| ||||||||||||  |||||| |||||||||| |||||||||||||||||| ||||| |||| |||||||||||    
T  15868270 tttaccccctagtttacttagttactctagtatgaataatcattgtatttttcattgtttttcaaactcaaattggtgaatttccccattttgagtttga 15868369  T
Q  153 gggggactattaga 166  Q
    ||||||||||||||    
T  15868370 gggggactattaga 15868383  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 14620432 - 14620502
Alignment:
Q  96 tgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattaga 166  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||||||||||    
T  14620432 tgtatttttcattgtatttcaaactcaaattggtgaatttccccattttaaatttgagggggactattaga 14620502  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 5378615 - 5378668
Alignment:
Q  102 tttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgaggg 155  Q
    |||||||||||| ||| ||||||||||| ||||| |||| ||||||||||||||    
T  5378615 tttcattgtattccaatctcaaattggtgaatttccccattttgagtttgaggg 5378668  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 19645633 - 19645593
Alignment:
Q  115 caaactcaaattggtaaattttcccactttgagtttgaggg 155  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  19645633 caaactcaaattggtgaatttccccattttgagtttgaggg 19645593  T

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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 4896059 - 4895937
Alignment:
Q  45 atttgttagttttac-ccccaattttatctagttactttagtatgaataaattgtaattttcattgtatttcaaactcaaattggtaaattttcccactt 143  Q
    ||||| ||||||||| |||||||||||  ||||||||| || || || |||||||||||| ||||||||||||||||||||||||| ||||| |||| ||    
T  4896059 atttgctagttttactccccaattttacttagttacttcaggataaacaaattgtaatttccattgtatttcaaactcaaattggtgaatttccccattt 4895960  T
Q  144 tgagtttgagggggactattaga 166  Q
    |||||||||||||||||||||||    
T  4895959 tgagtttgagggggactattaga 4895937  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 10412123 - 10412251
Alignment:
Q  45 atttgttagttttacccccaattttatctagttactttagtatgaataa--attgtaattttcattgtatttcaaactcaaattggtaaattttcccact 142  Q
    ||||| |||||||||||| | |||||  | |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||| |||  | | |    
T  10412123 atttgctagttttaccccta-ttttagttggttactttagtatgaataatcattgtaattt-cattgtatttcaaactcaaattggtaattttctcaatt 10412220  T
Q  143 ttgagtttgagggggactattagaatatagt 173  Q
    |||||||||||||||||||||||| ||||||    
T  10412221 ttgagtttgagggggactattagagtatagt 10412251  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 25502312 - 25502234
Alignment:
Q  96 tgtaattttcattgtattt-caaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    |||| |||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||    
T  25502312 tgtatttttcattgtattttcaaactcaaattggtgaatttccccattttgagtttgagggggactattagagtatagt 25502234  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 33689780 - 33689863
Alignment:
Q  87 tgaataaattgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatata 171  Q
    ||||||| |||| ||||||||||| |||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||| ||||    
T  33689780 tgaataatttgtcattttcattgtgtttcaaactcaaattggtgaatttccccattttgagtttga-ggggactattagagtata 33689863  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 21637422 - 21637366
Alignment:
Q  117 aactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||||||||| |||||  | |  |||||||||||||||||||||||| ||||||    
T  21637422 aactcaaattggtgaatttctcaatcttgagtttgagggggactattagagtatagt 21637366  T

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Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 3284427 - 3284493
Alignment:
Q  100 attttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattaga 166  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3284427 attttcattgtatttcaaactcaaattggtgagttttcccactttgagtttgagggggactattaga 3284493  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 9311956 - 9312020
Alignment:
Q  102 tttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattaga 166  Q
    |||||| ||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||    
T  9311956 tttcatggtatttcaaactcaaattggtgaaattctccactttgagtttgagggggactattaga 9312020  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 13046332 - 13046413
Alignment:
Q  106 attgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagttaattagagtgtttgag 190  Q
    |||||||||||||||||||||| |||| ||||||| ||| ||| |||  |||||||||| | |||||||| ||| ||||||||||    
T  13046332 attgtatttcaaactcaaattgataaa-tttcccattttcagtatga--gggactattatactatagttagttaaagtgtttgag 13046413  T

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Target: scaffold0245 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 11024 - 11095
Alignment:
Q  100 attttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatata 171  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  11024 attttcatagtatttcaaactcaaattggtgaattttcccactttgagtttgaaggggactattagagtata 11095  T

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Target: scaffold0060 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 9276 - 9190
Alignment:
Q  87 tgaataaattgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  | |  |||||||||||| ||||||||||| ||||||    
T  9276 tgaataaattgtaattttcattgtatttcaaactcaaattggtgaatttctcaatcttgagtttgaggaggactattagagtatagt 9190  T

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Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 10885403 - 10885517
Alignment:
Q  45 atttgttagttttacc-cccaattttatctagttactttagtatgaataaattgtaattttcattgtatttcaaactc-aaattggtaaattttcccact 142  Q
    ||||| |||||||||  ||||||||||  ||||||||| ||||| || |||||||||||| |||| |||||||||||| |||||||| ||||| ||||||    
T  10885403 atttgctagttttactacccaattttacttagttacttcagtataaacaaattgtaatttccattttatttcaaactcaaaattggtgaatttccccact 10885502  T
Q  143 ttgagtttgaggggg 157  Q
    |||||||||||||||    
T  10885503 ttgagtttgaggggg 10885517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 35673594 - 35673509
Alignment:
Q  88 gaataaattgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||||||||  | || ||| ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||    
T  35673594 gaataaattgtatgtgtccttgcatttcaaactcaaattggtaaatttccccattttgagtttgagggggactaatagagtatagt 35673509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 1174945 - 1175012
Alignment:
Q  107 ttgtatttcaaactcaaa-ttggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    |||||||||||||||||| ||||| |||||| ||| ||||||||||||| ||||||||||| ||||||    
T  1174945 ttgtatttcaaactcaaaattggtgaatttttccattttgagtttgaggaggactattagagtatagt 1175012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 28220553 - 28220464
Alignment:
Q  100 attttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagttaattagagtgtttgag 190  Q
    |||||||||||||| |||  || |||||||||| ||||||| ||| ||||||| | ||||||||| |||||||||| ||||| | ||||||    
T  28220553 attttcattgtattccaatttcgaattggtaaa-tttcccatttttagtttgaagaggactattacaatatagttagttagaatctttgag 28220464  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 4608878 - 4608997
Alignment:
Q  55 tttacccccaattttatctagttactttagtatgaataa--attgtaattttcattgtatttcaaactcaaattggtaaattttcccactttgagtttga 152  Q
    ||||||||||||||||   |||||||| ||| |||||||  |||||||||| ||| |||| ||||||||||||| || |||||| ||| |||||||||||    
T  4608878 tttacccccaattttacacagttacttaagtttgaataatcattgtaattt-catagtatctcaaactcaaattagtgaatttttccattttgagtttga 4608976  T
Q  153 gggggactattagaatatagt 173  Q
    |||||||||||||| ||||||    
T  4608977 gggggactattagagtatagt 4608997  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 26667288 - 26667214
Alignment:
Q  104 tcattgtattt-caaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagttaatta 179  Q
    ||||||||||| ||||||||||||||| |||||| |||  |||||||||||||||||||||| | |||||| |||||    
T  26667288 tcattgtattttcaaactcaaattggtgaatttttcca--ttgagtttgagggggactattacagtatagtgaatta 26667214  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 18807656 - 18807584
Alignment:
Q  102 tttcattgtatttcaaactcaaa-ttggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  18807656 tttcattgtatttcaaactcaaaattggtgaattttcccattttgagtttgagggggactattagagtatagt 18807584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 25054147 - 25054217
Alignment:
Q  104 tcattgtatttcaaactcaaattggtaaattttccc-actttgagtttgagggggactattagaatatagt 173  Q
    |||||||||||||||||||||||||| ||||| ||| | |||||||| |||||||||||||||| ||||||    
T  25054147 tcattgtatttcaaactcaaattggtgaatttccccaattttgagttcgagggggactattagagtatagt 25054217  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 31337741 - 31337821
Alignment:
Q  100 attttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggg-gactattagaatatagttaatta 179  Q
    |||||||||| |||||||||| |||||||| |||||  ||||||||||||||||||| |||||||| | | ||||||||||    
T  31337741 attttcattgcatttcaaacttaaattggtgaatttctccactttgagtttgaggggtgactattacattgtagttaatta 31337821  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 11810039 - 11809972
Alignment:
Q  107 ttgtatttcaaactcaaa-ttggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    |||||||||||||||||| ||||| ||||| |||| ||| ||||||||||||||||||||| ||||||    
T  11810039 ttgtatttcaaactcaaaattggtgaatttccccattttaagtttgagggggactattagagtatagt 11809972  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 52520484 - 52520537
Alignment:
Q  102 tttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgaggg 155  Q
    |||||||||||| ||| ||||||||||| ||||| |||| ||||||||||||||    
T  52520484 tttcattgtattccaagctcaaattggtgaatttccccattttgagtttgaggg 52520537  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 21631526 - 21631452
Alignment:
Q  100 attttcattgtattt-caaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    ||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  21631526 attttcactgtattttcaaactcaaattggtgaattttcccattttgagtttgagggggactattagagtatagt 21631452  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 44963050 - 44963110
Alignment:
Q  103 ttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactatta 164  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||| | ||||||    
T  44963050 ttcattgtatttcaaactcaaatt-gtgaattttcccattttgagtttgagggaggctatta 44963110  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 9878442 - 9878369
Alignment:
Q  100 attttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgagggggactattagaatatagt 173  Q
    |||||| |||||| ||||| |||||||| | | ||| |||| ||||||||||||| ||||||||||| ||||||    
T  9878442 attttctttgtatatcaaattcaaattgatgagtttccccattttgagtttgaggaggactattagagtatagt 9878369  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 28124936 - 28124883
Alignment:
Q  102 tttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgaggg 155  Q
    |||||||||||| ||| ||||||||||| ||||| |||| ||||||||||||||    
T  28124936 tttcattgtattccaagctcaaattggtgaatttccccattttgagtttgaggg 28124883  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 4895467 - 4895520
Alignment:
Q  102 tttcattgtatttcaaactcaaattggtaaattttcccactttgagtttgaggg 155  Q
    |||||||||||| ||| ||||||||||| | ||| |||| ||||||||||||||    
T  4895467 tttcattgtattccaagctcaaattggtgattttccccattttgagtttgaggg 4895520  T

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Target: scaffold0311 (Bit Score: 28; Significance: 0.000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 14975 - 15018
Alignment:
Q  103 ttcattgtatttcaaactcaaattggtaaattttcccactttga 146  Q
    ||||||||||| ||||||||||||||| ||||| |||| |||||    
T  14975 ttcattgtattccaaactcaaattggtgaatttccccattttga 15018  T

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